Variant report

Variant	rs10991742
Chromosome Location	chr9:92787910-92787911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIRAS2-4	chr9:92786845-92788381	ENSG00000227555

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10116454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10119836	1.00[YRI][hapmap]
rs10991740	0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991751	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991758	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991799	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991807	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991819	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12685781	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs13299384	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301471	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16906087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473649	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35752917	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744002	0.82[EUR][1000 genomes]
rs4744025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744027	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744499	0.82[EUR][1000 genomes]
rs4744515	0.94[EUR][1000 genomes]
rs62558472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62558473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662867	0.82[EUR][1000 genomes]
rs9650758	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:92783000-92789000	Enhancers	Primary B cells from cord blood	blood
3	chr9:92784800-92788600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:92786200-92788400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:92786600-92788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:92786800-92788000	Enhancers	Fetal Intestine Small	intestine
7	chr9:92786800-92788200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:92786800-92788400	Enhancers	Adipose Nuclei	Adipose
9	chr9:92787000-92788000	Enhancers	Spleen	Spleen
10	chr9:92787000-92788200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:92787000-92788200	Enhancers	Fetal Intestine Large	intestine
12	chr9:92787000-92788400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:92787000-92788400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:92787000-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:92787200-92788200	Enhancers	Esophagus	oesophagus
16	chr9:92787200-92788400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:92787200-92789200	Enhancers	HMEC	breast
18	chr9:92787400-92789000	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:92787400-92789200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:92787600-92788000	Enhancers	Lung	lung
21	chr9:92787600-92788000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:92787600-92788200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr9:92787600-92788400	Enhancers	Fetal Muscle Leg	muscle
24	chr9:92787600-92789200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:92787600-92790200	Enhancers	NHEK	skin
26	chr9:92787800-92788000	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr9:92787800-92788200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr9:92787800-92788200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr9:92787800-92788400	Enhancers	Fetal Muscle Trunk	muscle
30	chr9:92787800-92788400	Enhancers	Placenta	Placenta
31	chr9:92787800-92788400	Enhancers	HSMM	muscle
32	chr9:92787800-92788400	Enhancers	HSMMtube	muscle
33	chr9:92787800-92789000	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr9:92787800-92789800	Enhancers	HUES6 Cell Line	embryonic stem cell

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