Variant report

Variant	rs13301471
Chromosome Location	chr9:92808229-92808230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92802544..92805290-chr9:92807406..92810319,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227555	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10116454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991740	0.93[CEU][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991742	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991751	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991758	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10991799	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991807	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991819	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10993742	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993743	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12685781	0.92[CEU][hapmap]
rs13299384	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16906087	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16906093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34473649	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35752917	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744025	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744027	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744515	0.89[EUR][1000 genomes]
rs62558472	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62558473	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9650758	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92807400-92808400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:92807400-92808800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:92807600-92808400	Enhancers	A549	lung
4	chr9:92807800-92808600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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