Variant report

Variant	rs16906087
Chromosome Location	chr9:92782027-92782028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92779670..92782151-chr9:92784242..92786135,2	MCF-7	breast:
2	chr9:92775713..92778575-chr9:92781169..92782694,2	MCF-7	breast:
3	chr9:92776616..92778176-chr9:92780846..92782771,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263967	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10116454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10991740	0.93[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991758	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991799	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991807	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991819	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993742	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993743	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12685781	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13299384	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301471	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16906093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473649	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35752917	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744002	0.84[EUR][1000 genomes]
rs4744025	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744027	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744499	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4744515	0.96[EUR][1000 genomes]
rs62558472	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62558473	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662867	0.84[EUR][1000 genomes]
rs9650758	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus
2	chr9:92777800-92782600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:92780600-92784800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:92781000-92782800	Enhancers	Lung	lung
5	chr9:92781000-92783800	Enhancers	Aorta	Aorta
6	chr9:92781200-92783000	Weak transcription	Primary B cells from cord blood	blood
7	chr9:92781200-92783400	Enhancers	HSMMtube	muscle
8	chr9:92781400-92783600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:92781400-92784000	Enhancers	HSMM	muscle
10	chr9:92781400-92784200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr9:92781400-92784800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:92781600-92782800	Enhancers	Fetal Muscle Leg	muscle
14	chr9:92781600-92783400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr9:92781600-92783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:92781600-92784200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr9:92781600-92786600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:92781800-92782200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr9:92781800-92782200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr9:92781800-92782200	Enhancers	Psoas Muscle	Psoas
21	chr9:92782000-92782800	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:92782000-92783600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr9:92782000-92783800	Enhancers	HMEC	breast
24	chr9:92782000-92784200	Enhancers	Left Ventricle	heart

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