Variant report

Variant	rs662867
Chromosome Location	chr9:92757697-92757698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92756890..92759147-chr9:92762216..92764609,2	MCF-7	breast:
2	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:
3	chr9:92218567..92220178-chr9:92756424..92758715,2	MCF-7	breast:
4	chr9:92216749..92221414-chr9:92756839..92763409,10	MCF-7	breast:
5	chr9:92755082..92756623-chr9:92757434..92759681,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10991740	0.84[EUR][1000 genomes]
rs10991742	0.82[EUR][1000 genomes]
rs10991751	0.84[EUR][1000 genomes]
rs10991758	0.81[EUR][1000 genomes]
rs10991799	0.81[EUR][1000 genomes]
rs10991819	0.82[EUR][1000 genomes]
rs10993742	0.82[EUR][1000 genomes]
rs10993743	0.82[EUR][1000 genomes]
rs12685019	0.88[ASN][1000 genomes]
rs12685781	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13299384	0.81[EUR][1000 genomes]
rs16906087	0.84[EUR][1000 genomes]
rs16906093	0.82[EUR][1000 genomes]
rs34473649	0.81[EUR][1000 genomes]
rs34954114	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4744002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744025	0.81[EUR][1000 genomes]
rs4744027	0.81[EUR][1000 genomes]
rs4744499	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744515	0.80[EUR][1000 genomes]
rs62558472	0.82[EUR][1000 genomes]
rs62558473	0.82[EUR][1000 genomes]
rs7027794	0.96[ASN][1000 genomes]
rs9650758	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3402834	chr9:92753532-92758030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
3	chr9:92752800-92759600	Enhancers	Liver	Liver
4	chr9:92753600-92757800	Enhancers	Pancreas	Pancrea
5	chr9:92753600-92758000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
7	chr9:92754000-92758600	Enhancers	Fetal Heart	heart
8	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
9	chr9:92754200-92759200	Enhancers	Placenta	Placenta
10	chr9:92754400-92758000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:92754400-92758000	Enhancers	Left Ventricle	heart
12	chr9:92754400-92758000	Enhancers	Right Ventricle	heart
13	chr9:92754400-92758200	Enhancers	Lung	lung
14	chr9:92754400-92758200	Enhancers	Ovary	ovary
15	chr9:92754600-92758000	Enhancers	Fetal Muscle Leg	muscle
16	chr9:92754600-92758800	Enhancers	Right Atrium	heart
17	chr9:92754800-92758600	Enhancers	Adipose Nuclei	Adipose
18	chr9:92755000-92758400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:92755000-92762000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:92755200-92757800	Enhancers	Primary B cells from cord blood	blood
21	chr9:92755200-92758200	Enhancers	Duodenum Mucosa	Duodenum
22	chr9:92755200-92758200	Enhancers	Spleen	Spleen
23	chr9:92755400-92758200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr9:92755400-92758200	Enhancers	Fetal Lung	lung
25	chr9:92755600-92757800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:92755600-92757800	Enhancers	Stomach Smooth Muscle	stomach
27	chr9:92756000-92757800	Enhancers	HSMMtube	muscle
28	chr9:92756000-92758200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr9:92756000-92761800	Weak transcription	Brain Substantia Nigra	brain
30	chr9:92756200-92758600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:92756200-92761800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:92756400-92757800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr9:92756600-92758000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr9:92756600-92758000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr9:92756800-92757800	Weak transcription	Esophagus	oesophagus
36	chr9:92756800-92758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:92756800-92760600	Weak transcription	NHDF-Ad	bronchial
38	chr9:92756800-92761600	Weak transcription	Psoas Muscle	Psoas
39	chr9:92757000-92758000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:92757000-92758000	Weak transcription	Colonic Mucosa	Colon
41	chr9:92757000-92758000	Flanking Bivalent TSS/Enh	HepG2	liver
42	chr9:92757000-92758200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:92757000-92758800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr9:92757000-92761000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:92757000-92761200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:92757200-92758000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:92757200-92758400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr9:92757200-92759400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr9:92757200-92761200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:92757200-92761800	Weak transcription	Hela-S3	cervix

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