Variant report

Variant	rs7027906
Chromosome Location	chr9:73281358-73281359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1011308	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10868872	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10868875	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11142539	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12344255	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12348503	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12352329	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12380623	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17055479	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3829095	0.81[EUR][1000 genomes]
rs4131069	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4540466	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72718987	0.81[EUR][1000 genomes]
rs7862783	0.82[EUR][1000 genomes]
rs7874138	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs879857	0.94[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7027906	RPL13AP5	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73279800-73281400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:73281000-73281400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:73281200-73282200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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