Variant report

Variant	rs7029362
Chromosome Location	chr9:86670693-86670694
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10746730	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10746731	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10780646	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10868090	0.95[ASN][1000 genomes]
rs11790588	0.83[ASN][1000 genomes]
rs1436932	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2083006	0.95[ASN][1000 genomes]
rs7030208	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7033778	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72749155	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv614762	chr9:86625243-86700593	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1045322	chr9:86666993-86701912	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7029362	ISCA1	cis	cerebellum	SCAN
rs7029362	C9orf64	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86668800-86671400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:86669200-86673000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr9:86669600-86671200	Weak transcription	Ovary	ovary
4	chr9:86669800-86671000	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:86670000-86671000	Weak transcription	Left Ventricle	heart
6	chr9:86670200-86673400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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