Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86671448..86673966-chr9:86679778..86681333,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10746730	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10746731	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10780645	0.85[LWK][hapmap];0.81[YRI][hapmap]
rs10780646	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10868079	0.90[JPT][hapmap]
rs10868090	0.81[ASN][1000 genomes]
rs11790588	0.95[ASN][1000 genomes]
rs1436932	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1572031	0.90[JPT][hapmap]
rs192705	0.86[JPT][hapmap]
rs2065516	0.86[JPT][hapmap]
rs2083006	0.81[ASN][1000 genomes]
rs296885	0.90[JPT][hapmap]
rs61338127	0.89[ASN][1000 genomes]
rs6559750	0.86[JPT][hapmap]
rs7026436	0.85[JPT][hapmap]
rs7029362	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7030208	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72749155	0.94[ASN][1000 genomes]
rs754144	0.90[JPT][hapmap]
rs7853235	0.82[LWK][hapmap];0.81[YRI][hapmap]
rs7869387	0.85[JPT][hapmap]
rs7875289	0.86[JPT][hapmap]
rs930340	0.85[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv614762	chr9:86625243-86700593	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1045322	chr9:86666993-86701912	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7033778	ISCA1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86669200-86673000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr9:86670200-86673400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:86671000-86673400	Enhancers	Fetal Muscle Leg	muscle
4	chr9:86671200-86672000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:86671400-86672400	Enhancers	Fetal Muscle Trunk	muscle
6	chr9:86671600-86672000	Weak transcription	Psoas Muscle	Psoas

Quick Search: