Variant report

Variant	rs7030424
Chromosome Location	chr9:27108002-27108003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10511795	1.00[YRI][hapmap]
rs10511797	1.00[YRI][hapmap]
rs13288193	0.88[AFR][1000 genomes]
rs1541145	1.00[YRI][hapmap]
rs17756179	1.00[YRI][hapmap]
rs17756299	1.00[YRI][hapmap]
rs3429	1.00[YRI][hapmap]
rs60130669	0.89[AFR][1000 genomes]
rs7038875	0.89[AFR][1000 genomes]
rs7041877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438278	0.89[AFR][1000 genomes]
rs73438282	0.89[AFR][1000 genomes]
rs73438302	0.89[AFR][1000 genomes]
rs73440204	0.89[AFR][1000 genomes]
rs73440205	0.89[AFR][1000 genomes]
rs73440214	0.89[AFR][1000 genomes]
rs73440217	0.89[AFR][1000 genomes]
rs73440218	0.94[AFR][1000 genomes]
rs73440223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7865919	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27095200-27108800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:27095600-27108800	Weak transcription	NH-A	brain
3	chr9:27096800-27109000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:27098400-27108800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:27104600-27108800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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