Variant report

Variant	rs7038875
Chromosome Location	chr9:27094934-27094935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10511792	1.00[JPT][hapmap]
rs10511795	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10511797	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13288193	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1541145	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs16910873	1.00[JPT][hapmap]
rs17694324	1.00[JPT][hapmap]
rs17694499	1.00[JPT][hapmap]
rs17694631	0.86[AFR][1000 genomes]
rs17756179	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17756299	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs3429	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs55828240	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60130669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542663	0.80[AFR][1000 genomes]
rs62542665	0.80[AFR][1000 genomes]
rs62542669	0.85[AFR][1000 genomes]
rs62542670	0.85[AFR][1000 genomes]
rs62542672	0.80[AFR][1000 genomes]
rs62542704	0.80[AFR][1000 genomes]
rs62542706	0.86[AFR][1000 genomes]
rs62542707	0.86[AFR][1000 genomes]
rs62542708	0.85[AFR][1000 genomes]
rs62546685	0.80[AFR][1000 genomes]
rs671451	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018962	1.00[JPT][hapmap]
rs7030424	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7041877	0.89[AFR][1000 genomes]
rs7044910	1.00[JPT][hapmap]
rs73436012	0.80[AFR][1000 genomes]
rs73436044	0.80[AFR][1000 genomes]
rs73438223	0.80[AFR][1000 genomes]
rs73438273	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440218	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440223	0.89[AFR][1000 genomes]
rs7865596	0.80[AFR][1000 genomes]
rs7865919	0.89[AFR][1000 genomes]
rs7867192	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27091600-27095800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:27093800-27095000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:27093800-27095200	Enhancers	HSMMtube	muscle
4	chr9:27093800-27095600	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:27093800-27095800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:27094000-27095000	Enhancers	Fetal Kidney	kidney
7	chr9:27094000-27095200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:27094000-27095400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:27094000-27095800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:27094000-27095800	Enhancers	HSMM	muscle
11	chr9:27094000-27096400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:27094200-27095000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:27094200-27095000	Enhancers	Hela-S3	cervix
14	chr9:27094200-27095400	Enhancers	NHEK	skin
15	chr9:27094200-27095600	Enhancers	HUVEC	blood vessel
16	chr9:27094400-27095000	Enhancers	Fetal Lung	lung
17	chr9:27094400-27095200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:27094400-27095200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:27094400-27095600	Enhancers	NHDF-Ad	bronchial
20	chr9:27094400-27096400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:27094600-27095000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:27094600-27095000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:27094600-27095000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:27094600-27095000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:27094600-27095000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:27094600-27095000	Enhancers	Fetal Muscle Leg	muscle
27	chr9:27094600-27095000	Flanking Active TSS	NH-A	brain
28	chr9:27094600-27095200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:27094600-27095200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:27094600-27095200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr9:27094600-27095200	Enhancers	HMEC	breast
32	chr9:27094600-27095400	Enhancers	NHLF	lung
33	chr9:27094800-27095000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:27094800-27096000	Enhancers	Osteobl	bone

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