Variant report

Variant	rs671451
Chromosome Location	chr9:27093926-27093927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10511792	1.00[JPT][hapmap]
rs10511795	1.00[JPT][hapmap]
rs10511797	1.00[JPT][hapmap]
rs1541145	1.00[JPT][hapmap]
rs16910873	1.00[JPT][hapmap]
rs17694324	1.00[JPT][hapmap]
rs17694499	1.00[JPT][hapmap]
rs17756179	1.00[JPT][hapmap]
rs17756299	1.00[JPT][hapmap]
rs55828240	0.97[EUR][1000 genomes]
rs60130669	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018962	1.00[JPT][hapmap]
rs7038875	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044910	1.00[JPT][hapmap]
rs73438273	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438278	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438282	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438302	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440204	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440205	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440214	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440217	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73440218	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867192	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:27089600-27094000	Weak transcription	Fetal Kidney	kidney
3	chr9:27090200-27094000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:27090200-27094000	Weak transcription	NH-A	brain
5	chr9:27090600-27094000	Weak transcription	HSMM	muscle
6	chr9:27090800-27094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:27090800-27094600	Weak transcription	NHLF	lung
8	chr9:27091600-27095800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:27092200-27094000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:27092600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:27092600-27094600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:27093800-27094000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:27093800-27094200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr9:27093800-27094400	Enhancers	Osteobl	bone
15	chr9:27093800-27095000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:27093800-27095200	Enhancers	HSMMtube	muscle
17	chr9:27093800-27095600	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:27093800-27095800	Enhancers	Muscle Satellite Cultured Cells	--

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