Variant report

Variant	rs7865919
Chromosome Location	chr9:27064730-27064731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511795	0.80[AFR][1000 genomes]
rs10511797	0.80[AFR][1000 genomes]
rs13288193	0.88[AFR][1000 genomes]
rs1541145	0.80[AFR][1000 genomes]
rs17756179	0.80[AFR][1000 genomes]
rs17756299	0.84[AFR][1000 genomes]
rs3429	0.80[AFR][1000 genomes]
rs60130669	0.89[AFR][1000 genomes]
rs62542663	0.80[AFR][1000 genomes]
rs62542665	0.80[AFR][1000 genomes]
rs62542669	0.84[AFR][1000 genomes]
rs62542670	0.84[AFR][1000 genomes]
rs62542672	0.80[AFR][1000 genomes]
rs62542704	0.80[AFR][1000 genomes]
rs62542708	0.84[AFR][1000 genomes]
rs62546685	0.80[AFR][1000 genomes]
rs7030424	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7038875	0.89[AFR][1000 genomes]
rs7041877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436012	0.80[AFR][1000 genomes]
rs73436044	0.80[AFR][1000 genomes]
rs73438223	0.80[AFR][1000 genomes]
rs73438278	0.89[AFR][1000 genomes]
rs73438282	0.89[AFR][1000 genomes]
rs73438302	0.89[AFR][1000 genomes]
rs73440204	0.89[AFR][1000 genomes]
rs73440205	0.89[AFR][1000 genomes]
rs73440214	0.89[AFR][1000 genomes]
rs73440217	0.89[AFR][1000 genomes]
rs73440218	0.83[AFR][1000 genomes]
rs73440223	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7865596	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv466334	chr9:27028947-27098940	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv613944	chr9:27028947-27098940	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27009800-27070000	Weak transcription	Psoas Muscle	Psoas
2	chr9:27014400-27068200	Weak transcription	Fetal Heart	heart
3	chr9:27018400-27065200	Weak transcription	Osteobl	bone
4	chr9:27024400-27082600	Weak transcription	Gastric	stomach
5	chr9:27024600-27075800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:27024600-27078600	Weak transcription	Aorta	Aorta
7	chr9:27024600-27079000	Weak transcription	Pancreas	Pancrea
8	chr9:27024600-27082400	Weak transcription	Primary T cells from cord blood	blood
9	chr9:27024600-27083400	Weak transcription	Left Ventricle	heart
10	chr9:27024600-27085000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:27024600-27086800	Weak transcription	Right Ventricle	heart
12	chr9:27024800-27094800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:27025200-27064800	Weak transcription	Fetal Brain Female	brain
14	chr9:27025200-27078000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:27025400-27066800	Weak transcription	Brain Anterior Caudate	brain
16	chr9:27025400-27075600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:27037000-27069600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:27038000-27085000	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:27038200-27065400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:27046600-27068000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:27048800-27076200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:27049000-27065800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:27049400-27067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:27049400-27072600	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:27049600-27066800	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:27049800-27071600	Weak transcription	Fetal Stomach	stomach
27	chr9:27053800-27086800	Weak transcription	HSMM	muscle
28	chr9:27054000-27065000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:27055000-27067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:27055200-27087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:27057400-27083000	Weak transcription	Liver	Liver
32	chr9:27058200-27065600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:27058400-27069600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:27058400-27075200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr9:27059400-27068000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:27060200-27077000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr9:27060200-27085400	Weak transcription	Adipose Nuclei	Adipose
38	chr9:27060800-27067600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:27062000-27069200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:27062200-27066400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:27062200-27068000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:27062200-27074400	Weak transcription	Ovary	ovary
43	chr9:27062200-27081400	Weak transcription	Fetal Intestine Large	intestine
44	chr9:27062400-27065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:27062600-27065400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:27064200-27066000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:27064200-27066000	Weak transcription	Fetal Lung	lung
48	chr9:27064400-27066000	Enhancers	HUVEC	blood vessel
49	chr9:27064600-27072200	Weak transcription	Fetal Intestine Small	intestine

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