Variant report

Variant	rs7040954
Chromosome Location	chr9:115666959-115666960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115606178..115608888-chr9:115665655..115667772,2	K562	blood:
2	chr9:115661009..115663181-chr9:115664939..115667779,3	MCF-7	breast:
3	chr9:115658787..115660468-chr9:115666043..115668753,2	K562	blood:
4	chr9:115665975..115668573-chr9:115679220..115680887,2	K562	blood:
5	chr9:115665727..115668117-chr9:115679003..115681024,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10115711	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124260	1.00[ASN][1000 genomes]
rs10124939	0.96[EUR][1000 genomes]
rs10124979	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733594	1.00[ASN][1000 genomes]
rs10733598	1.00[ASN][1000 genomes]
rs10733599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739370	1.00[ASN][1000 genomes]
rs10739373	1.00[ASN][1000 genomes]
rs10739374	1.00[ASN][1000 genomes]
rs10739376	1.00[ASN][1000 genomes]
rs10739380	0.96[EUR][1000 genomes]
rs10759590	1.00[ASN][1000 genomes]
rs10759603	1.00[ASN][1000 genomes]
rs10759604	1.00[ASN][1000 genomes]
rs1158331	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324931	1.00[ASN][1000 genomes]
rs1418409	1.00[ASN][1000 genomes]
rs1539338	1.00[ASN][1000 genomes]
rs1570754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693411	1.00[ASN][1000 genomes]
rs1711746	1.00[ASN][1000 genomes]
rs1711747	1.00[ASN][1000 genomes]
rs1832890	1.00[ASN][1000 genomes]
rs1891402	1.00[ASN][1000 genomes]
rs2025544	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051018	1.00[ASN][1000 genomes]
rs2147643	1.00[ASN][1000 genomes]
rs2147646	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153837	1.00[ASN][1000 genomes]
rs2182048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185769	1.00[ASN][1000 genomes]
rs2645985	1.00[ASN][1000 genomes]
rs2645994	1.00[ASN][1000 genomes]
rs2796025	1.00[ASN][1000 genomes]
rs2796028	1.00[ASN][1000 genomes]
rs2796031	1.00[ASN][1000 genomes]
rs2796035	1.00[ASN][1000 genomes]
rs4246892	1.00[ASN][1000 genomes]
rs4360356	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549852	1.00[ASN][1000 genomes]
rs4978507	1.00[ASN][1000 genomes]
rs4978510	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4978511	0.96[EUR][1000 genomes]
rs4979154	1.00[ASN][1000 genomes]
rs4979155	1.00[ASN][1000 genomes]
rs4979157	1.00[ASN][1000 genomes]
rs4979165	1.00[ASN][1000 genomes]
rs4979183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477959	1.00[ASN][1000 genomes]
rs700122	1.00[ASN][1000 genomes]
rs7026450	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030795	1.00[ASN][1000 genomes]
rs7038684	1.00[ASN][1000 genomes]
rs7041965	1.00[ASN][1000 genomes]
rs7047914	1.00[ASN][1000 genomes]
rs7859175	1.00[ASN][1000 genomes]
rs7869100	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786961	1.00[ASN][1000 genomes]
rs786965	1.00[ASN][1000 genomes]
rs786966	1.00[ASN][1000 genomes]
rs786967	1.00[ASN][1000 genomes]
rs786968	1.00[ASN][1000 genomes]
rs786969	1.00[ASN][1000 genomes]
rs786972	1.00[ASN][1000 genomes]
rs786973	1.00[ASN][1000 genomes]
rs786977	1.00[ASN][1000 genomes]
rs7872628	1.00[ASN][1000 genomes]
rs787278	1.00[ASN][1000 genomes]
rs787281	1.00[ASN][1000 genomes]
rs787285	1.00[ASN][1000 genomes]
rs787286	1.00[ASN][1000 genomes]
rs787287	1.00[ASN][1000 genomes]
rs787291	1.00[ASN][1000 genomes]
rs787296	1.00[ASN][1000 genomes]
rs787299	1.00[ASN][1000 genomes]
rs787302	1.00[ASN][1000 genomes]
rs787303	1.00[ASN][1000 genomes]
rs7873289	1.00[ASN][1000 genomes]
rs885387	1.00[ASN][1000 genomes]
rs912662	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947609	1.00[ASN][1000 genomes]
rs980345	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115661600-115667000	Weak transcription	Fetal Kidney	kidney
2	chr9:115665800-115667400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:115665800-115682000	Weak transcription	Right Atrium	heart
4	chr9:115666000-115667000	Weak transcription	HepG2	liver

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