Variant report

Variant	rs704895
Chromosome Location	chr3:42992660-42992661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11129987	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11129988	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1346414	0.80[EUR][1000 genomes]
rs1346415	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2288372	0.81[ASN][1000 genomes]
rs526511	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs542394	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs545023	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs551658	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59789275	0.81[ASN][1000 genomes]
rs60046829	0.81[ASN][1000 genomes]
rs60607395	0.81[ASN][1000 genomes]
rs60616619	0.85[ASN][1000 genomes]
rs61102947	0.81[ASN][1000 genomes]
rs615462	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs619660	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs638602	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs649682	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6798520	0.85[ASN][1000 genomes]
rs7621158	0.81[ASN][1000 genomes]
rs834183	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs834325	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs834579	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs834584	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs834699	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-42994400	Weak transcription	Fetal Stomach	stomach
2	chr3:42978400-42995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:42978400-43003000	Weak transcription	Fetal Intestine Small	intestine
4	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
5	chr3:42978600-43003000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:42978600-43020400	Weak transcription	Ovary	ovary
7	chr3:42981400-42995800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:42983600-43003400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:42985000-43003000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:42985200-42997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:42985200-43003000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
13	chr3:42989600-42994400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:42990600-42994400	Weak transcription	Stomach Mucosa	stomach

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