Variant report

Variant	rs60607395
Chromosome Location	chr3:42984915-42984916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11129987	0.87[ASN][1000 genomes]
rs11129988	0.87[ASN][1000 genomes]
rs2288371	0.91[ASN][1000 genomes]
rs2288372	0.83[ASN][1000 genomes]
rs2288373	0.91[ASN][1000 genomes]
rs526511	0.95[ASN][1000 genomes]
rs542394	0.95[ASN][1000 genomes]
rs57113579	0.86[ASN][1000 genomes]
rs57664746	0.86[ASN][1000 genomes]
rs57795561	0.86[ASN][1000 genomes]
rs59789275	1.00[ASN][1000 genomes]
rs60046829	1.00[ASN][1000 genomes]
rs60549782	0.86[ASN][1000 genomes]
rs60616619	0.95[ASN][1000 genomes]
rs61102947	1.00[ASN][1000 genomes]
rs615462	0.91[ASN][1000 genomes]
rs619660	0.95[ASN][1000 genomes]
rs638602	0.95[ASN][1000 genomes]
rs6778645	0.91[ASN][1000 genomes]
rs6779194	0.83[ASN][1000 genomes]
rs6798520	0.95[ASN][1000 genomes]
rs704895	0.81[ASN][1000 genomes]
rs72869044	0.86[ASN][1000 genomes]
rs72869047	0.86[ASN][1000 genomes]
rs7621158	1.00[ASN][1000 genomes]
rs834183	0.95[ASN][1000 genomes]
rs834579	0.87[ASN][1000 genomes]
rs834584	0.87[ASN][1000 genomes]
rs834699	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42977800-42986600	Weak transcription	Fetal Brain Male	brain
2	chr3:42978400-42985000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:42978400-42985200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:42978400-42985400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:42978400-42986200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:42978400-42989000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:42978400-42990600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:42978400-42994400	Weak transcription	Fetal Stomach	stomach
9	chr3:42978400-42995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:42978400-43003000	Weak transcription	Fetal Intestine Small	intestine
11	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
12	chr3:42978600-42987800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:42978600-42989000	Weak transcription	Fetal Kidney	kidney
14	chr3:42978600-42991000	Weak transcription	Brain Anterior Caudate	brain
15	chr3:42978600-43003000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:42978600-43020400	Weak transcription	Ovary	ovary
17	chr3:42979000-42991600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:42980400-42988400	Strong transcription	Placenta	Placenta
19	chr3:42981400-42995800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:42983400-42985000	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:42983400-42985400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:42983600-43003400	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:42983800-42987400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:42983800-42987800	Weak transcription	Fetal Intestine Large	intestine
25	chr3:42983800-42989600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:42984600-42985000	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr3:42984600-42985200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:42984800-42985000	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr3:42984800-42985000	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr3:42984800-42985000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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