Variant report

Variant	rs57113579
Chromosome Location	chr3:43052546-43052547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs526511	0.82[ASN][1000 genomes]
rs542394	0.82[ASN][1000 genomes]
rs57664746	1.00[ASN][1000 genomes]
rs57795561	1.00[ASN][1000 genomes]
rs59789275	0.86[ASN][1000 genomes]
rs60046829	0.86[ASN][1000 genomes]
rs60549782	1.00[ASN][1000 genomes]
rs60607395	0.86[ASN][1000 genomes]
rs60616619	0.82[ASN][1000 genomes]
rs61102947	0.86[ASN][1000 genomes]
rs615462	0.86[ASN][1000 genomes]
rs619660	0.82[ASN][1000 genomes]
rs638602	0.82[ASN][1000 genomes]
rs6798520	0.82[ASN][1000 genomes]
rs72869044	1.00[ASN][1000 genomes]
rs72869047	1.00[ASN][1000 genomes]
rs7621158	0.86[ASN][1000 genomes]
rs834183	0.82[ASN][1000 genomes]
rs834699	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43043600-43054400	Weak transcription	Placenta	Placenta
2	chr3:43043800-43054600	Weak transcription	Fetal Kidney	kidney
3	chr3:43046600-43053000	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:43048200-43056800	Weak transcription	Primary T cells from cord blood	blood
5	chr3:43048800-43053400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:43049600-43053000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:43050000-43053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:43051400-43053000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:43051600-43052600	Enhancers	Fetal Brain Male	brain
10	chr3:43052200-43052600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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