Variant report

Variant	rs60046829
Chromosome Location	chr3:42999271-42999272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11129987	0.87[ASN][1000 genomes]
rs11129988	0.87[ASN][1000 genomes]
rs2288371	0.91[ASN][1000 genomes]
rs2288372	0.83[ASN][1000 genomes]
rs2288373	0.91[ASN][1000 genomes]
rs526511	0.95[ASN][1000 genomes]
rs542394	0.95[ASN][1000 genomes]
rs57113579	0.86[ASN][1000 genomes]
rs57664746	0.86[ASN][1000 genomes]
rs57795561	0.86[ASN][1000 genomes]
rs59789275	1.00[ASN][1000 genomes]
rs60549782	0.86[ASN][1000 genomes]
rs60607395	1.00[ASN][1000 genomes]
rs60616619	0.95[ASN][1000 genomes]
rs61102947	1.00[ASN][1000 genomes]
rs615462	0.91[ASN][1000 genomes]
rs619660	0.95[ASN][1000 genomes]
rs638602	0.95[ASN][1000 genomes]
rs6778645	0.91[ASN][1000 genomes]
rs6779194	0.83[ASN][1000 genomes]
rs6798520	0.95[ASN][1000 genomes]
rs704895	0.81[ASN][1000 genomes]
rs72869044	0.86[ASN][1000 genomes]
rs72869047	0.86[ASN][1000 genomes]
rs7621158	1.00[ASN][1000 genomes]
rs834183	0.95[ASN][1000 genomes]
rs834579	0.87[ASN][1000 genomes]
rs834584	0.87[ASN][1000 genomes]
rs834699	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-43003000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
3	chr3:42978600-43003000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:42978600-43020400	Weak transcription	Ovary	ovary
5	chr3:42983600-43003400	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:42985000-43003000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:42985200-43003000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
9	chr3:42994600-43006000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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