Variant report

Variant	rs57664746
Chromosome Location	chr3:43048432-43048433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs526511	0.82[ASN][1000 genomes]
rs542394	0.82[ASN][1000 genomes]
rs57113579	1.00[ASN][1000 genomes]
rs57795561	1.00[ASN][1000 genomes]
rs59789275	0.86[ASN][1000 genomes]
rs60046829	0.86[ASN][1000 genomes]
rs60549782	1.00[ASN][1000 genomes]
rs60607395	0.86[ASN][1000 genomes]
rs60616619	0.82[ASN][1000 genomes]
rs61102947	0.86[ASN][1000 genomes]
rs615462	0.86[ASN][1000 genomes]
rs619660	0.82[ASN][1000 genomes]
rs638602	0.82[ASN][1000 genomes]
rs6798520	0.82[ASN][1000 genomes]
rs72869044	1.00[ASN][1000 genomes]
rs72869047	1.00[ASN][1000 genomes]
rs7621158	0.86[ASN][1000 genomes]
rs834183	0.82[ASN][1000 genomes]
rs834699	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3524438	chr3:43048343-43048672	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3524439	chr3:43048356-43048531	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3524437	chr3:43048411-43048484	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3524440	chr3:43048415-43048482	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43043600-43054400	Weak transcription	Placenta	Placenta
2	chr3:43043800-43054600	Weak transcription	Fetal Kidney	kidney
3	chr3:43044200-43049800	Weak transcription	Ovary	ovary
4	chr3:43044600-43052200	Weak transcription	Fetal Stomach	stomach
5	chr3:43044800-43051800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:43046600-43049000	Weak transcription	Fetal Thymus	thymus
7	chr3:43046600-43053000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:43047000-43048600	Enhancers	Brain Anterior Caudate	brain
9	chr3:43047000-43049600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:43047200-43049400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:43047800-43048800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:43047800-43049400	Weak transcription	Thymus	Thymus
13	chr3:43047800-43049600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:43048200-43048800	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:43048200-43056800	Weak transcription	Primary T cells from cord blood	blood
16	chr3:43048400-43049800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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