Variant report

Variant	rs7069904
Chromosome Location	chr10:89649838-89649839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89640838..89642681-chr10:89647239..89649894,3	K562	blood:
2	chr10:89649701..89651266-chr10:89669658..89672345,2	MCF-7	breast:
3	chr10:89646944..89651726-chr10:89652897..89657139,4	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12414916	1.00[YRI][hapmap]
rs12775367	1.00[JPT][hapmap]
rs17102281	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17106896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs34417600	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34981965	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34986811	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35161364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs35451923	0.87[AFR][1000 genomes]
rs35876089	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41284074	0.92[EUR][1000 genomes]
rs59085061	0.92[EUR][1000 genomes]
rs61096197	0.89[EUR][1000 genomes]
rs73354918	0.92[EUR][1000 genomes]
rs7921925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv551832	chr10:89630424-89650759	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1833763	chr10:89649838-89653686	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89633800-89655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:89636000-89655400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
9	chr10:89639000-89655400	Weak transcription	Fetal Heart	heart
10	chr10:89639000-89655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:89639000-89656200	Weak transcription	Stomach Mucosa	stomach
12	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
13	chr10:89642400-89652400	Weak transcription	Aorta	Aorta
14	chr10:89642600-89657000	Strong transcription	Dnd41	blood
15	chr10:89644600-89650400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:89644600-89654000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:89645000-89651000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:89645200-89651400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:89646600-89652600	Weak transcription	NHDF-Ad	bronchial
20	chr10:89646600-89663800	Weak transcription	Fetal Kidney	kidney
21	chr10:89646800-89652400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:89646800-89655800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:89646800-89657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:89646800-89659400	Strong transcription	Fetal Thymus	thymus
25	chr10:89646800-89663000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:89647000-89652600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:89647000-89655400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:89647000-89667400	Weak transcription	HMEC	breast
29	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:89647200-89652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:89647200-89657400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:89647200-89662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:89647400-89650400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:89647600-89655400	Weak transcription	Fetal Brain Female	brain
36	chr10:89647600-89656600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:89647600-89657000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
39	chr10:89647800-89655600	Weak transcription	Liver	Liver
40	chr10:89647800-89657000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:89647800-89662000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:89647800-89671000	Weak transcription	A549	lung
44	chr10:89648000-89650000	Weak transcription	HSMM	muscle
45	chr10:89648000-89650400	Weak transcription	Fetal Stomach	stomach
46	chr10:89648000-89651600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:89648000-89652400	Weak transcription	NHLF	lung
48	chr10:89648000-89652600	Weak transcription	Brain Germinal Matrix	brain
49	chr10:89648000-89654600	Weak transcription	Psoas Muscle	Psoas
50	chr10:89648000-89656800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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