Variant report

Variant	rs35876089
Chromosome Location	chr10:89722052-89722053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89623108..89624927-chr10:89720086..89724191,3	MCF-7	breast:
2	chr10:89721293..89722807-chr20:55841031..55842902,2	MCF-7	breast:
3	chr10:89721575..89723341-chr10:89728907..89731665,2	MCF-7	breast:
4	chr10:89620372..89623295-chr10:89720146..89723263,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction
ENSG00000101144	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17106896	0.92[EUR][1000 genomes]
rs34417600	0.92[EUR][1000 genomes]
rs34981965	0.94[EUR][1000 genomes]
rs34986811	0.92[EUR][1000 genomes]
rs35161364	1.00[EUR][1000 genomes]
rs41284074	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59085061	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61096197	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7069904	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73354918	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7921925	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
2	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
4	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
6	chr10:89684000-89725600	Weak transcription	Gastric	stomach
7	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
8	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
9	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:89700200-89723600	Weak transcription	Ovary	ovary
15	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
16	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:89706200-89723800	Weak transcription	Lung	lung
18	chr10:89708800-89724000	Weak transcription	Left Ventricle	heart
19	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
20	chr10:89709000-89724600	Weak transcription	K562	blood
21	chr10:89709400-89724000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:89711200-89726000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:89711200-89727000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:89712400-89725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:89713000-89723200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:89713000-89725400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr10:89713200-89724800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
33	chr10:89714600-89723400	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:89714600-89738600	Weak transcription	NHEK	skin
35	chr10:89715600-89723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:89715600-89723800	Weak transcription	Fetal Intestine Small	intestine
37	chr10:89715600-89724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:89715600-89726600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:89715600-89726800	Weak transcription	Esophagus	oesophagus
40	chr10:89715600-89727400	Weak transcription	Pancreas	Pancrea
41	chr10:89715600-89728000	Weak transcription	Small Intestine	intestine
42	chr10:89716800-89723800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:89716800-89724800	Strong transcription	Primary B cells from cord blood	blood
44	chr10:89717000-89727800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:89717200-89726600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:89717400-89726600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr10:89717600-89724200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr10:89717600-89724600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr10:89717600-89725800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:89717600-89727000	Strong transcription	Placenta	Placenta

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