Variant report

Variant	rs34981965
Chromosome Location	chr10:89717112-89717113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89708994..89710668-chr10:89716753..89718565,2	K562	blood:
2	chr10:89578473..89580973-chr10:89716614..89719298,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17102281	1.00[ASN][1000 genomes]
rs17106896	0.97[EUR][1000 genomes]
rs34417600	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34986811	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35161364	0.94[EUR][1000 genomes]
rs35876089	0.94[EUR][1000 genomes]
rs41284074	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59085061	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61096197	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069904	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73354918	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921925	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
2	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
4	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
7	chr10:89684000-89725600	Weak transcription	Gastric	stomach
8	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
9	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
10	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
13	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:89700200-89723600	Weak transcription	Ovary	ovary
18	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
19	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:89706200-89723800	Weak transcription	Lung	lung
21	chr10:89708800-89724000	Weak transcription	Left Ventricle	heart
22	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
23	chr10:89709000-89724600	Weak transcription	K562	blood
24	chr10:89709200-89719800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:89709400-89724000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr10:89711200-89718600	Strong transcription	GM12878-XiMat	blood
28	chr10:89711200-89726000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr10:89711200-89727000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:89711800-89720800	Weak transcription	HepG2	liver
31	chr10:89712400-89725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:89712600-89721200	Weak transcription	Brain Anterior Caudate	brain
33	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:89712800-89717400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:89712800-89721000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:89712800-89721000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:89713000-89717200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:89713000-89717200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:89713000-89717600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr10:89713000-89720000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:89713000-89721000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:89713000-89723200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:89713000-89725400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:89713200-89717400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:89713200-89717400	Weak transcription	NH-A	brain
48	chr10:89713200-89717600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:89713200-89717600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:89713200-89717600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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