Variant report

Variant	rs7073751
Chromosome Location	chr10:18973795-18973796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1055114	0.95[EUR][1000 genomes]
rs11015416	1.00[ASN][1000 genomes]
rs11015454	1.00[ASN][1000 genomes]
rs17622920	1.00[ASN][1000 genomes]
rs17623007	1.00[ASN][1000 genomes]
rs17695669	0.92[EUR][1000 genomes]
rs1971272	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035752	1.00[ASN][1000 genomes]
rs34503140	1.00[ASN][1000 genomes]
rs4279920	1.00[ASN][1000 genomes]
rs45499092	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45580334	1.00[ASN][1000 genomes]
rs61298471	1.00[ASN][1000 genomes]
rs7070044	0.98[EUR][1000 genomes]
rs7093518	1.00[ASN][1000 genomes]
rs7902450	1.00[ASN][1000 genomes]
rs7905432	0.80[EUR][1000 genomes]
rs7905730	1.00[ASN][1000 genomes]
rs7917217	1.00[ASN][1000 genomes]
rs7917323	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7073751	CACNB2	Cis_1M	lymphoblastoid	RTeQTL
rs7073751	NSUN6	cis	lung	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:18951400-18973800	Weak transcription	Aorta	Aorta
3	chr10:18964600-18973800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:18964800-18973800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:18966200-18976000	Weak transcription	HepG2	liver
6	chr10:18966600-18974600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:18968400-18978800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:18969800-18974200	Enhancers	Osteobl	bone
9	chr10:18969800-18974800	Enhancers	Hela-S3	cervix
10	chr10:18970000-18974200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:18971800-18975000	Weak transcription	Dnd41	blood
12	chr10:18972200-18974000	Weak transcription	Liver	Liver
13	chr10:18972600-18974200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:18972600-18974200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:18973000-18974000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:18973000-18974000	Weak transcription	HMEC	breast
17	chr10:18973200-18974400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:18973400-18973800	Enhancers	Fetal Lung	lung
19	chr10:18973400-18973800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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