Variant report

Variant	rs4279920
Chromosome Location	chr10:18897544-18897545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18897158..18899309-chr10:18901969..18904753,2	K562	blood:
2	chr10:18896603..18898658-chr10:18901969..18903863,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10828973	0.94[EUR][1000 genomes]
rs11014582	0.89[EUR][1000 genomes]
rs11014594	0.89[EUR][1000 genomes]
rs11014660	0.89[EUR][1000 genomes]
rs11014696	0.86[EUR][1000 genomes]
rs11014721	0.89[EUR][1000 genomes]
rs11014733	0.89[EUR][1000 genomes]
rs11014797	0.94[EUR][1000 genomes]
rs11014800	0.94[EUR][1000 genomes]
rs11014805	0.94[EUR][1000 genomes]
rs11014825	0.94[EUR][1000 genomes]
rs11014831	0.92[EUR][1000 genomes]
rs11014961	0.92[EUR][1000 genomes]
rs11014985	0.94[EUR][1000 genomes]
rs11014990	0.94[EUR][1000 genomes]
rs11015001	0.94[EUR][1000 genomes]
rs11015020	0.94[EUR][1000 genomes]
rs11015022	0.94[EUR][1000 genomes]
rs11015033	0.94[EUR][1000 genomes]
rs11015034	0.94[EUR][1000 genomes]
rs11015046	0.94[EUR][1000 genomes]
rs11015060	0.94[EUR][1000 genomes]
rs11015065	0.94[EUR][1000 genomes]
rs11015066	0.94[EUR][1000 genomes]
rs11015089	0.97[EUR][1000 genomes]
rs11015091	1.00[EUR][1000 genomes]
rs11015100	1.00[EUR][1000 genomes]
rs11015104	1.00[EUR][1000 genomes]
rs11015180	1.00[EUR][1000 genomes]
rs11015185	1.00[EUR][1000 genomes]
rs11015366	0.94[EUR][1000 genomes]
rs11015416	1.00[ASN][1000 genomes]
rs11015454	1.00[ASN][1000 genomes]
rs11015514	0.94[EUR][1000 genomes]
rs11015519	0.94[EUR][1000 genomes]
rs11015533	0.91[EUR][1000 genomes]
rs11015540	0.91[EUR][1000 genomes]
rs11015592	0.91[EUR][1000 genomes]
rs11492557	0.94[EUR][1000 genomes]
rs11511205	0.94[EUR][1000 genomes]
rs11516859	0.94[EUR][1000 genomes]
rs12355664	0.91[EUR][1000 genomes]
rs12355670	0.91[EUR][1000 genomes]
rs12356125	1.00[EUR][1000 genomes]
rs12356280	1.00[EUR][1000 genomes]
rs12356286	1.00[EUR][1000 genomes]
rs12356533	0.89[EUR][1000 genomes]
rs12357063	0.89[EUR][1000 genomes]
rs12357123	0.89[EUR][1000 genomes]
rs12357491	1.00[EUR][1000 genomes]
rs12358173	0.89[EUR][1000 genomes]
rs12360352	0.94[EUR][1000 genomes]
rs17622004	1.00[EUR][1000 genomes]
rs17622211	1.00[EUR][1000 genomes]
rs17622520	0.94[EUR][1000 genomes]
rs17622920	1.00[ASN][1000 genomes]
rs17623007	1.00[ASN][1000 genomes]
rs1971272	1.00[ASN][1000 genomes]
rs2035752	1.00[ASN][1000 genomes]
rs34503140	1.00[ASN][1000 genomes]
rs4466722	0.88[EUR][1000 genomes]
rs4497294	0.94[EUR][1000 genomes]
rs45452100	1.00[EUR][1000 genomes]
rs45580334	1.00[ASN][1000 genomes]
rs4570480	0.94[EUR][1000 genomes]
rs61298471	1.00[ASN][1000 genomes]
rs7073751	1.00[ASN][1000 genomes]
rs7093518	1.00[ASN][1000 genomes]
rs7902450	1.00[ASN][1000 genomes]
rs7905730	1.00[ASN][1000 genomes]
rs7917217	1.00[ASN][1000 genomes]
rs7917323	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:18864800-18898000	Weak transcription	Fetal Kidney	kidney
7	chr10:18866600-18899400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:18867600-18899600	Weak transcription	Placenta	Placenta
9	chr10:18867800-18900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
14	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
15	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:18872400-18899600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:18875600-18900600	Weak transcription	Esophagus	oesophagus
25	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:18877200-18899200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:18877200-18899400	Weak transcription	K562	blood
28	chr10:18877200-18899600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
30	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
31	chr10:18877400-18897800	Weak transcription	Adipose Nuclei	Adipose
32	chr10:18877400-18898000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
34	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
35	chr10:18877600-18900000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:18877600-18916400	Weak transcription	Gastric	stomach
37	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
39	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:18882200-18899400	Strong transcription	Liver	Liver
41	chr10:18884200-18899800	Weak transcription	Fetal Lung	lung
42	chr10:18884200-18900200	Weak transcription	Fetal Brain Female	brain
43	chr10:18884200-18900400	Weak transcription	Ovary	ovary
44	chr10:18884200-18900600	Weak transcription	Brain Germinal Matrix	brain
45	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
46	chr10:18884400-18900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:18884600-18900200	Weak transcription	Fetal Thymus	thymus
48	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:18884800-18909400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:18885200-18901200	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links