Variant report

Variant	rs12355664
Chromosome Location	chr10:18974824-18974825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18973620..18975663-chr10:18978657..18981110,2	K562	blood:
2	chr10:18969086..18970965-chr10:18973281..18975325,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014582	1.00[CEU][hapmap]
rs11014594	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11014660	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11014696	1.00[AMR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11014733	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11014797	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014800	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014805	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014825	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014831	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014990	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015020	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015046	0.86[EUR][1000 genomes]
rs11015060	0.86[EUR][1000 genomes]
rs11015065	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015091	0.91[EUR][1000 genomes]
rs11015100	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11015104	0.91[EUR][1000 genomes]
rs11015180	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015185	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015514	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015533	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015540	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11516859	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12355670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12356125	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12356280	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12356286	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12356533	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12357123	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12357491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12358173	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12360352	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17622004	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17622211	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17622520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4279920	0.91[EUR][1000 genomes]
rs4497294	0.86[EUR][1000 genomes]
rs45452100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4570480	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18951000-18976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:18966200-18976000	Weak transcription	HepG2	liver
3	chr10:18968400-18978800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:18971800-18975000	Weak transcription	Dnd41	blood

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