Variant report

Variant	rs12360352
Chromosome Location	chr10:18931864-18931865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:18927647..18933802-chr10:18937639..18941916,7	K562	blood:
2	chr10:18929497..18932239-chr10:18933812..18935882,2	MCF-7	breast:
3	chr10:18929573..18932544-chr10:18939226..18941814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241058	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014520	1.00[AMR][1000 genomes]
rs11014582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014594	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014660	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014696	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014733	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014797	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014800	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014805	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014825	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014831	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014990	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015020	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015046	0.89[EUR][1000 genomes]
rs11015060	0.89[EUR][1000 genomes]
rs11015065	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11015091	0.94[EUR][1000 genomes]
rs11015100	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11015104	0.94[EUR][1000 genomes]
rs11015180	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015185	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015514	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015533	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015540	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11516859	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12354739	1.00[AMR][1000 genomes]
rs12355360	0.89[AMR][1000 genomes]
rs12355664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12355670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12356125	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356280	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356286	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356533	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12357063	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12357123	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12357491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12358173	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17620201	0.89[AMR][1000 genomes]
rs17622004	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17622211	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17622520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4279920	0.94[EUR][1000 genomes]
rs4466722	0.83[EUR][1000 genomes]
rs4497294	0.89[EUR][1000 genomes]
rs45452100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4570480	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18905000-18938200	Weak transcription	Hela-S3	cervix
2	chr10:18916800-18935200	Weak transcription	K562	blood
3	chr10:18916800-18936200	Weak transcription	A549	lung
4	chr10:18916800-18937000	Weak transcription	GM12878-XiMat	blood
5	chr10:18916800-18938400	Weak transcription	HSMMtube	muscle
6	chr10:18916800-18939800	Weak transcription	Aorta	Aorta
7	chr10:18916800-18940200	Weak transcription	Spleen	Spleen
8	chr10:18917000-18932400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:18917000-18932600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:18917000-18934200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:18917000-18934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:18917000-18934400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:18917000-18934600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:18917000-18934600	Weak transcription	Fetal Brain Female	brain
15	chr10:18917000-18934800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:18917000-18934800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:18917000-18935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:18917000-18935000	Weak transcription	Primary T cells from cord blood	blood
19	chr10:18917000-18936800	Weak transcription	Brain Germinal Matrix	brain
20	chr10:18917000-18937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:18917000-18937400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:18917000-18938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:18917000-18938200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr10:18917000-18938200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:18917000-18938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:18917000-18938200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:18917000-18938200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:18917000-18938200	Weak transcription	Brain Angular Gyrus	brain
29	chr10:18917000-18938400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:18917000-18938400	Weak transcription	Ovary	ovary
31	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:18917000-18938800	Weak transcription	HSMM	muscle
34	chr10:18917000-18939600	Weak transcription	Placenta	Placenta
35	chr10:18917000-18939800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:18917000-18940200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:18917000-18940200	Weak transcription	Lung	lung
38	chr10:18917200-18935600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:18917200-18937800	Weak transcription	Adipose Nuclei	Adipose
40	chr10:18921400-18939000	Weak transcription	Right Ventricle	heart
41	chr10:18922600-18939600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:18923200-18936600	Weak transcription	Fetal Brain Male	brain
43	chr10:18924800-18937800	Weak transcription	Fetal Lung	lung
44	chr10:18925200-18937600	Weak transcription	Fetal Heart	heart
45	chr10:18925200-18939200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:18925600-18939400	Weak transcription	Brain Substantia Nigra	brain
47	chr10:18926000-18940200	Weak transcription	Small Intestine	intestine
48	chr10:18926200-18939200	Weak transcription	Fetal Kidney	kidney
49	chr10:18926400-18938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:18926600-18938200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links