Variant report

Variant	rs11014520
Chromosome Location	chr10:18789298-18789299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes]
rs11014582	1.00[AMR][1000 genomes]
rs11014594	1.00[AMR][1000 genomes]
rs11014660	1.00[AMR][1000 genomes]
rs11014696	1.00[AMR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes]
rs11014733	0.89[AMR][1000 genomes]
rs11014797	1.00[AMR][1000 genomes]
rs11014800	1.00[AMR][1000 genomes]
rs11014805	1.00[AMR][1000 genomes]
rs11014825	1.00[AMR][1000 genomes]
rs11014831	1.00[AMR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes]
rs11014985	1.00[AMR][1000 genomes]
rs11014990	1.00[AMR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes]
rs11015065	1.00[AMR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes]
rs11015180	1.00[AMR][1000 genomes]
rs11015185	0.89[AMR][1000 genomes]
rs11015366	1.00[AMR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes]
rs11516859	1.00[AMR][1000 genomes]
rs12354739	1.00[AMR][1000 genomes]
rs12355360	0.89[AMR][1000 genomes]
rs12356125	1.00[AMR][1000 genomes]
rs12356280	1.00[AMR][1000 genomes]
rs12356286	0.89[AMR][1000 genomes]
rs12357063	1.00[AMR][1000 genomes]
rs12357123	1.00[AMR][1000 genomes]
rs12357491	1.00[AMR][1000 genomes]
rs12358173	1.00[AMR][1000 genomes]
rs12360352	1.00[AMR][1000 genomes]
rs17620201	0.89[AMR][1000 genomes]
rs17622004	1.00[AMR][1000 genomes]
rs17622520	1.00[AMR][1000 genomes]
rs45452100	1.00[AMR][1000 genomes]
rs4570480	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18775600-18800600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
4	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
5	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:18779600-18803200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18781000-18803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18785600-18789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:18786000-18789600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:18786000-18794600	Weak transcription	Aorta	Aorta
12	chr10:18786600-18790000	Enhancers	Fetal Heart	heart
13	chr10:18786800-18802000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:18787400-18790400	Weak transcription	Brain Anterior Caudate	brain
15	chr10:18787400-18807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:18787400-18808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:18787400-18810200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:18787600-18789400	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:18787600-18794600	Weak transcription	Ovary	ovary
20	chr10:18787600-18803200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:18788000-18801800	Weak transcription	Fetal Stomach	stomach
22	chr10:18788200-18794600	Weak transcription	Fetal Lung	lung
23	chr10:18788200-18808400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:18788200-18809600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:18788400-18789400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:18788400-18789800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:18789000-18790200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links