Variant report

Variant	rs11014961
Chromosome Location	chr10:18863199-18863200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10828973	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014520	0.89[AMR][1000 genomes]
rs11014582	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014594	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014660	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014696	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014721	0.92[EUR][1000 genomes]
rs11014733	0.92[EUR][1000 genomes]
rs11014797	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014800	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014805	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014825	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014831	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014985	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014990	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015001	0.97[EUR][1000 genomes]
rs11015020	0.97[EUR][1000 genomes]
rs11015022	0.97[EUR][1000 genomes]
rs11015033	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015034	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015046	0.97[EUR][1000 genomes]
rs11015060	0.97[EUR][1000 genomes]
rs11015065	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015066	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015089	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015091	0.92[EUR][1000 genomes]
rs11015100	0.92[EUR][1000 genomes]
rs11015104	0.92[EUR][1000 genomes]
rs11015180	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11015185	0.92[EUR][1000 genomes]
rs11015366	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015514	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015519	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015533	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015540	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015592	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11492557	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11511205	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11516859	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12354739	0.89[AMR][1000 genomes]
rs12355664	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12355670	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12356125	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12356280	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12356286	0.92[EUR][1000 genomes]
rs12356533	0.92[EUR][1000 genomes]
rs12357063	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12357123	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12357491	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12358173	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12360352	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17622004	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17622211	0.92[EUR][1000 genomes]
rs17622520	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4279920	0.92[EUR][1000 genomes]
rs4466722	0.92[EUR][1000 genomes]
rs4497294	0.97[EUR][1000 genomes]
rs45452100	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4570480	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1835982	chr10:18833550-18872699	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv1845973	chr10:18841795-18872699	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv1793359	chr10:18841795-18872872	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv1801825	chr10:18853581-18872699	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18840800-18867200	Weak transcription	Fetal Thymus	thymus
2	chr10:18842000-18866800	Weak transcription	Left Ventricle	heart
3	chr10:18842000-18868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:18842000-18869200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18842000-18886400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:18844000-18871000	Weak transcription	Fetal Heart	heart
7	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:18846400-18866600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:18846600-18866600	Weak transcription	Pancreas	Pancrea
10	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:18848800-18866800	Weak transcription	Aorta	Aorta
12	chr10:18849000-18868600	Weak transcription	Gastric	stomach
13	chr10:18849400-18866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:18850000-18865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:18852600-18864800	Weak transcription	Ovary	ovary
17	chr10:18853200-18866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:18858000-18863200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr10:18859600-18868600	Weak transcription	K562	blood
20	chr10:18860000-18863200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr10:18860400-18863200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:18861000-18883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:18861400-18864000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr10:18861600-18866200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:18861600-18867000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:18861800-18863400	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr10:18861800-18869000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:18862000-18866200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:18862200-18863400	Weak transcription	Primary B cells from cord blood	blood
30	chr10:18862200-18863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:18862200-18865600	Weak transcription	Adipose Nuclei	Adipose
32	chr10:18862200-18866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:18862200-18868800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:18862200-18894600	Weak transcription	HSMM	muscle
35	chr10:18862400-18864400	Weak transcription	Primary T cells from cord blood	blood
36	chr10:18862400-18864800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr10:18862400-18865400	Weak transcription	Fetal Stomach	stomach
38	chr10:18862400-18865600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:18862400-18866000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:18862400-18866600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:18862400-18866600	Weak transcription	Fetal Intestine Large	intestine
42	chr10:18862400-18866800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:18862400-18866800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr10:18862400-18867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:18862400-18878400	Strong transcription	Liver	Liver
46	chr10:18862600-18866200	Weak transcription	Dnd41	blood
47	chr10:18862600-18866800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:18862600-18866800	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:18862600-18869200	Weak transcription	Fetal Brain Male	brain
50	chr10:18862600-18876600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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