Variant report

Variant	rs12356533
Chromosome Location	chr10:18807644-18807645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10828973	0.94[EUR][1000 genomes]
rs11014582	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11014594	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11014660	1.00[EUR][1000 genomes]
rs11014696	0.97[EUR][1000 genomes]
rs11014721	1.00[EUR][1000 genomes]
rs11014733	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11014797	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11014800	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11014805	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11014825	0.94[EUR][1000 genomes]
rs11014831	0.92[EUR][1000 genomes]
rs11014961	0.92[EUR][1000 genomes]
rs11014985	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11014990	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11015001	0.94[EUR][1000 genomes]
rs11015020	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11015022	0.94[EUR][1000 genomes]
rs11015033	0.94[EUR][1000 genomes]
rs11015034	0.94[EUR][1000 genomes]
rs11015046	0.94[EUR][1000 genomes]
rs11015060	0.94[EUR][1000 genomes]
rs11015065	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11015066	0.94[EUR][1000 genomes]
rs11015089	0.86[EUR][1000 genomes]
rs11015091	0.89[EUR][1000 genomes]
rs11015100	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11015104	0.89[EUR][1000 genomes]
rs11015180	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs11015185	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11015366	0.83[EUR][1000 genomes]
rs11015514	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11015519	0.83[EUR][1000 genomes]
rs11015533	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11015540	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11015592	0.80[EUR][1000 genomes]
rs11492557	0.94[EUR][1000 genomes]
rs11511205	0.94[EUR][1000 genomes]
rs11516859	0.94[EUR][1000 genomes]
rs12249604	1.00[GIH][hapmap]
rs12355664	0.80[EUR][1000 genomes]
rs12355670	0.80[EUR][1000 genomes]
rs12356125	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12356280	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12356286	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12357063	1.00[EUR][1000 genomes]
rs12357123	1.00[EUR][1000 genomes]
rs12357491	0.89[EUR][1000 genomes]
rs12358173	1.00[EUR][1000 genomes]
rs12360352	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17611161	1.00[GIH][hapmap]
rs17622004	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17622211	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17622520	0.83[EUR][1000 genomes]
rs4279920	0.89[EUR][1000 genomes]
rs4466722	0.88[EUR][1000 genomes]
rs4497294	0.94[EUR][1000 genomes]
rs45452100	0.89[EUR][1000 genomes]
rs4570480	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
2	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
3	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:18787400-18808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18787400-18810200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:18788200-18808400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:18788200-18809600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:18789800-18807800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:18794000-18818400	Weak transcription	Fetal Brain Male	brain
12	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon
13	chr10:18800200-18826800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:18800400-18827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:18800800-18818800	Weak transcription	Brain Germinal Matrix	brain
16	chr10:18800800-18819400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:18801000-18818800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:18801200-18809800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:18802000-18825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:18802400-18808400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:18802400-18809600	Weak transcription	Liver	Liver
22	chr10:18802600-18807800	Weak transcription	Fetal Stomach	stomach
23	chr10:18802600-18809200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:18802600-18828000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:18802600-18828200	Weak transcription	Lung	lung
26	chr10:18802800-18809400	Weak transcription	Pancreas	Pancrea
27	chr10:18803600-18808600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:18803600-18808800	Weak transcription	Fetal Intestine Large	intestine
29	chr10:18803600-18809600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:18803600-18810000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:18803800-18809600	Weak transcription	Fetal Heart	heart
32	chr10:18804800-18807800	Weak transcription	Fetal Lung	lung
33	chr10:18804800-18808000	Weak transcription	Left Ventricle	heart
34	chr10:18806800-18811200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:18807200-18808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:18807200-18809400	Strong transcription	Brain Anterior Caudate	brain
37	chr10:18807200-18810600	Strong transcription	Aorta	Aorta
38	chr10:18807200-18810800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr10:18807200-18811000	Strong transcription	Ovary	ovary
40	chr10:18807200-18811000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr10:18807200-18826800	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:18807400-18811000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:18807400-18811200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:18807400-18828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:18807600-18816400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:18807600-18818800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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