Variant report

Variant	rs11015060
Chromosome Location	chr10:18887705-18887706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18832497..18833999-chr10:18887489..18889225,2	K562	blood:
2	chr10:18882733..18884546-chr10:18887488..18889531,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240291	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10828973	1.00[EUR][1000 genomes]
rs11014582	0.94[EUR][1000 genomes]
rs11014594	0.94[EUR][1000 genomes]
rs11014660	0.94[EUR][1000 genomes]
rs11014696	0.92[EUR][1000 genomes]
rs11014721	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014733	0.94[EUR][1000 genomes]
rs11014797	1.00[EUR][1000 genomes]
rs11014800	1.00[EUR][1000 genomes]
rs11014805	1.00[EUR][1000 genomes]
rs11014825	1.00[EUR][1000 genomes]
rs11014831	0.97[EUR][1000 genomes]
rs11014961	0.97[EUR][1000 genomes]
rs11014985	1.00[EUR][1000 genomes]
rs11014990	1.00[EUR][1000 genomes]
rs11015001	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11015020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015022	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015033	1.00[EUR][1000 genomes]
rs11015034	1.00[EUR][1000 genomes]
rs11015046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015065	1.00[EUR][1000 genomes]
rs11015066	1.00[EUR][1000 genomes]
rs11015089	0.92[EUR][1000 genomes]
rs11015091	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015100	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015104	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015180	0.94[EUR][1000 genomes]
rs11015185	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015366	0.89[EUR][1000 genomes]
rs11015514	0.89[EUR][1000 genomes]
rs11015519	0.89[EUR][1000 genomes]
rs11015533	0.86[EUR][1000 genomes]
rs11015540	0.86[EUR][1000 genomes]
rs11015592	0.86[EUR][1000 genomes]
rs11492557	1.00[EUR][1000 genomes]
rs11511205	1.00[EUR][1000 genomes]
rs11516859	1.00[EUR][1000 genomes]
rs12355360	0.90[AMR][1000 genomes]
rs12355664	0.86[EUR][1000 genomes]
rs12355670	0.86[EUR][1000 genomes]
rs12356125	0.94[EUR][1000 genomes]
rs12356280	0.94[EUR][1000 genomes]
rs12356286	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356533	0.94[EUR][1000 genomes]
rs12357063	0.94[EUR][1000 genomes]
rs12357123	0.94[EUR][1000 genomes]
rs12357491	0.94[EUR][1000 genomes]
rs12358173	0.94[EUR][1000 genomes]
rs12360352	0.89[EUR][1000 genomes]
rs17620201	0.90[AMR][1000 genomes]
rs17622004	0.94[EUR][1000 genomes]
rs17622211	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17622520	0.89[EUR][1000 genomes]
rs4279920	0.94[EUR][1000 genomes]
rs4466722	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4497294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45452100	0.94[EUR][1000 genomes]
rs4570480	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:18862200-18894600	Weak transcription	HSMM	muscle
5	chr10:18863000-18894600	Weak transcription	A549	lung
6	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:18864800-18898000	Weak transcription	Fetal Kidney	kidney
9	chr10:18866600-18899400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:18867600-18894400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:18867600-18899600	Weak transcription	Placenta	Placenta
12	chr10:18867800-18900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:18868000-18896400	Weak transcription	NHEK	skin
15	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:18868200-18896600	Weak transcription	Small Intestine	intestine
18	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
19	chr10:18868800-18896600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
21	chr10:18870200-18892000	Weak transcription	HepG2	liver
22	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:18870400-18894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
25	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:18871000-18896400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:18871400-18895000	Weak transcription	Fetal Brain Male	brain
28	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:18872400-18895000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:18872400-18899600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:18873000-18894600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:18873600-18896800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:18875600-18894600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:18875600-18895800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:18875600-18900600	Weak transcription	Esophagus	oesophagus
40	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:18877200-18891600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:18877200-18895000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:18877200-18896600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:18877200-18899200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:18877200-18899400	Weak transcription	K562	blood
46	chr10:18877200-18899600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
48	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
49	chr10:18877400-18889200	Weak transcription	Fetal Stomach	stomach
50	chr10:18877400-18890200	Weak transcription	Primary T cells fromperipheralblood	blood

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