Variant report

Variant	rs11014825
Chromosome Location	chr10:18839902-18839903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014520	1.00[AMR][1000 genomes]
rs11014582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014733	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015020	1.00[EUR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015046	1.00[EUR][1000 genomes]
rs11015060	1.00[EUR][1000 genomes]
rs11015065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11015091	0.94[EUR][1000 genomes]
rs11015100	0.94[EUR][1000 genomes]
rs11015104	0.94[EUR][1000 genomes]
rs11015180	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015185	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015366	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015514	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015519	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015533	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015540	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015592	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11516859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12355360	0.89[AMR][1000 genomes]
rs12355664	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12355670	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12356125	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356280	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356286	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356533	0.94[EUR][1000 genomes]
rs12357063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12357123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12357491	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12358173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12360352	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17620201	0.89[AMR][1000 genomes]
rs17622004	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17622211	0.94[EUR][1000 genomes]
rs17622520	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4279920	0.94[EUR][1000 genomes]
rs4466722	0.94[EUR][1000 genomes]
rs4497294	1.00[EUR][1000 genomes]
rs45452100	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4570480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1835982	chr10:18833550-18872699	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv511455	chr10:18837285-18854168	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
13	nsv550043	chr10:18837285-18859153	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
14	esv1814421	chr10:18839350-18862211	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
15	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18815200-18843600	Weak transcription	A549	lung
2	chr10:18816400-18841800	Strong transcription	Liver	Liver
3	chr10:18820800-18841600	Weak transcription	Hela-S3	cervix
4	chr10:18822000-18840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:18822800-18841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:18824200-18846200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:18824200-18850600	Weak transcription	NHLF	lung
9	chr10:18825600-18841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:18827200-18842000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:18827200-18845200	Weak transcription	NHEK	skin
12	chr10:18827400-18841600	Weak transcription	HMEC	breast
13	chr10:18828600-18841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:18828600-18841600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:18828600-18841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:18828600-18841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:18828600-18841800	Weak transcription	Pancreas	Pancrea
18	chr10:18828600-18843000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:18828600-18843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:18828600-18844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:18828600-18845400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:18828800-18846000	Weak transcription	Spleen	Spleen
23	chr10:18829000-18840400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:18829000-18841800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
26	chr10:18829800-18844000	Weak transcription	Brain Angular Gyrus	brain
27	chr10:18830000-18842000	Weak transcription	Fetal Brain Female	brain
28	chr10:18830000-18842400	Weak transcription	Brain Germinal Matrix	brain
29	chr10:18830200-18841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:18830200-18841800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:18830200-18841800	Weak transcription	Aorta	Aorta
32	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
33	chr10:18830400-18840000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:18830400-18840200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:18830400-18840400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:18830400-18840400	Weak transcription	Brain Anterior Caudate	brain
37	chr10:18830400-18840400	Weak transcription	HSMMtube	muscle
38	chr10:18830400-18841600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:18830400-18841800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:18830400-18841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:18830400-18841800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:18830400-18841800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:18830400-18841800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:18830400-18841800	Weak transcription	Brain Substantia Nigra	brain
45	chr10:18830400-18841800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:18830400-18843000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:18830600-18840200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:18830600-18840200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:18830600-18840200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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