Variant report

Variant	rs11014660
Chromosome Location	chr10:18817177-18817178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014520	1.00[AMR][1000 genomes]
rs11014582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014733	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015020	0.94[EUR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015046	0.94[EUR][1000 genomes]
rs11015060	0.94[EUR][1000 genomes]
rs11015065	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11015091	0.89[EUR][1000 genomes]
rs11015100	0.89[EUR][1000 genomes]
rs11015104	0.89[EUR][1000 genomes]
rs11015180	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015185	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015366	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015514	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015519	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015533	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015540	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11015592	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11516859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12354739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12355360	0.89[AMR][1000 genomes]
rs12355664	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12355670	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12356125	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12356280	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12356286	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12356533	1.00[EUR][1000 genomes]
rs12357063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12357123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12357491	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12358173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12360352	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17620201	0.89[AMR][1000 genomes]
rs17622004	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17622211	0.89[EUR][1000 genomes]
rs17622520	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4279920	0.89[EUR][1000 genomes]
rs4466722	0.88[EUR][1000 genomes]
rs4497294	0.94[EUR][1000 genomes]
rs45452100	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4570480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:18794000-18818400	Weak transcription	Fetal Brain Male	brain
4	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon
5	chr10:18800200-18826800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:18800400-18827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:18800800-18818800	Weak transcription	Brain Germinal Matrix	brain
8	chr10:18800800-18819400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:18801000-18818800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:18802000-18825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:18802600-18828000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:18802600-18828200	Weak transcription	Lung	lung
13	chr10:18807200-18826800	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:18807400-18828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:18807600-18818800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:18808000-18828000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:18808400-18827000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:18808800-18825400	Weak transcription	Fetal Brain Female	brain
19	chr10:18809000-18824000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:18809000-18827000	Weak transcription	Small Intestine	intestine
21	chr10:18809200-18819000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:18809800-18817800	Weak transcription	Fetal Stomach	stomach
23	chr10:18809800-18817800	Weak transcription	Pancreas	Pancrea
24	chr10:18810400-18818400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:18810400-18828000	Weak transcription	Brain Angular Gyrus	brain
26	chr10:18810600-18827000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:18810600-18828200	Weak transcription	Aorta	Aorta
28	chr10:18810800-18825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:18810800-18828000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:18811000-18817800	Weak transcription	Ovary	ovary
31	chr10:18811000-18817800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:18811000-18818200	Weak transcription	Left Ventricle	heart
33	chr10:18811000-18825400	Weak transcription	Right Ventricle	heart
34	chr10:18811000-18826800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:18811200-18818800	Weak transcription	Fetal Lung	lung
36	chr10:18811200-18819000	Weak transcription	Fetal Intestine Large	intestine
37	chr10:18812400-18825200	Weak transcription	Brain Anterior Caudate	brain
38	chr10:18812400-18827000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:18812600-18823000	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:18812800-18827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:18813000-18817800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:18814000-18828000	Weak transcription	Esophagus	oesophagus
43	chr10:18814600-18825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:18814600-18827000	Weak transcription	Thymus	Thymus
45	chr10:18814800-18825200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:18814800-18825400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr10:18814800-18827600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:18815000-18818800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:18815000-18826800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:18815200-18819800	Weak transcription	Dnd41	blood

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