Variant report

Variant	rs11015366
Chromosome Location	chr10:18941263-18941264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:18940223-18941440	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:18939354-18941389	GM12891	blood:	n/a	n/a
3	POLR2A	chr10:18941215-18941474	HepG2	liver:	n/a	n/a
4	POLR2A	chr10:18939392-18941357	GM12878	blood:	n/a	n/a
5	POLR2A	chr10:18939645-18941344	MCF10A-Er-Src	breast:	n/a	n/a
6	MXI1	chr10:18938046-18941559	SK-N-SH	brain:	n/a	n/a
7	E2F4	chr10:18939778-18941385	MCF10A-Er-Src	breast:	n/a	chr10:18940577-18940587
8	POLR2A	chr10:18939213-18942897	K562	blood:	n/a	n/a
9	POLR2A	chr10:18938705-18941275	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:18939570..18941733-chr6:27856904..27858914,2	MCF-7	breast:
2	chr10:18938647..18942217-chr10:18945513..18950534,9	MCF-7	breast:
3	chr10:18937279..18942257-chr10:18944156..18951752,16	MCF-7	breast:
4	chr10:18940688..18942837-chr10:18963626..18966243,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL5B-1	chr10:18941165-18942371	ENSG00000246675

No data

Variant related genes	Relation type
NSUN6	TF binding region
ENSG00000152487	Chromatin interaction
ENSG00000165997	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014520	1.00[AMR][1000 genomes]
rs11014582	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014594	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014660	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014696	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014733	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11014797	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014800	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014805	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014825	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014831	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014985	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014990	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015020	0.89[EUR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015046	0.89[EUR][1000 genomes]
rs11015060	0.89[EUR][1000 genomes]
rs11015065	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11015091	0.94[EUR][1000 genomes]
rs11015100	0.94[EUR][1000 genomes]
rs11015104	0.94[EUR][1000 genomes]
rs11015180	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015185	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11516859	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12354739	1.00[AMR][1000 genomes]
rs12355360	0.89[AMR][1000 genomes]
rs12355664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12355670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12356125	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356280	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356286	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12356533	0.83[EUR][1000 genomes]
rs12357063	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12357123	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12357491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12358173	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12360352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17620201	0.89[AMR][1000 genomes]
rs17622004	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17622211	0.94[EUR][1000 genomes]
rs17622520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4279920	0.94[EUR][1000 genomes]
rs4466722	0.83[EUR][1000 genomes]
rs4497294	0.89[EUR][1000 genomes]
rs45452100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4570480	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18937000-18941400	Active TSS	GM12878-XiMat	blood
2	chr10:18937600-18941400	Active TSS	K562	blood
3	chr10:18938200-18941400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:18938600-18941400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:18938600-18941400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:18939200-18941400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18939200-18941400	Active TSS	A549	lung
8	chr10:18939400-18941400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:18939800-18941600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr10:18940000-18941400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:18940600-18941400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:18940600-18941400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr10:18940800-18941400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:18940800-18941400	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr10:18940800-18941400	Flanking Active TSS	Liver	Liver
16	chr10:18940800-18941400	Flanking Active TSS	Dnd41	blood
17	chr10:18941000-18941400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:18941000-18941400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:18941000-18943000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:18941000-18945800	Weak transcription	Left Ventricle	heart
21	chr10:18941000-18947200	Weak transcription	Pancreas	Pancrea
22	chr10:18941000-18947200	Weak transcription	Thymus	Thymus
23	chr10:18941000-18947400	Weak transcription	Gastric	stomach
24	chr10:18941200-18941400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:18941200-18941400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr10:18941200-18941400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:18941200-18941400	Active TSS	Primary B cells from cord blood	blood
28	chr10:18941200-18941400	Enhancers	Primary T cells from cord blood	blood
29	chr10:18941200-18941400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr10:18941200-18941400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:18941200-18941400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:18941200-18941400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr10:18941200-18941400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:18941200-18941400	Enhancers	Brain Angular Gyrus	brain
35	chr10:18941200-18941400	Enhancers	Brain Germinal Matrix	brain
36	chr10:18941200-18941400	Enhancers	Brain Hippocampus Middle	brain
37	chr10:18941200-18941400	Enhancers	Colon Smooth Muscle	Colon
38	chr10:18941200-18941400	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:18941200-18941400	Active TSS	Fetal Brain Female	brain
40	chr10:18941200-18941400	Enhancers	Fetal Heart	heart
41	chr10:18941200-18941400	Enhancers	Fetal Intestine Large	intestine
42	chr10:18941200-18941400	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr10:18941200-18941400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:18941200-18941400	Enhancers	HepG2	liver
45	chr10:18941200-18941400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:18941200-18941400	Enhancers	Osteobl	bone
47	chr10:18941200-18941600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr10:18941200-18941600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:18941200-18941600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:18941200-18941800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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