Variant report

Variant	rs17622004
Chromosome Location	chr10:18899798-18899799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18891764..18894660-chr10:18898788..18901660,3	K562	blood:
2	chr10:18893160..18894729-chr10:18899323..18901039,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10828973	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014520	1.00[AMR][1000 genomes]
rs11014582	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014594	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014660	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014696	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11014721	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014733	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11014797	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014800	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014805	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014825	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014831	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014961	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014990	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015001	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015020	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11015022	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015033	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015034	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015046	0.94[EUR][1000 genomes]
rs11015060	0.94[EUR][1000 genomes]
rs11015065	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015066	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015089	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015091	1.00[EUR][1000 genomes]
rs11015100	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11015104	1.00[EUR][1000 genomes]
rs11015180	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015185	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015366	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015514	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015519	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11015533	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015540	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015592	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11492557	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11511205	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11516859	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12354739	1.00[AMR][1000 genomes]
rs12355360	0.89[AMR][1000 genomes]
rs12355664	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12355670	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12356125	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12356280	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12356286	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12356533	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12357063	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12357123	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12357491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12358173	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12360352	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17620201	0.89[AMR][1000 genomes]
rs17622211	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17622520	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4279920	1.00[EUR][1000 genomes]
rs4466722	0.88[EUR][1000 genomes]
rs4497294	0.94[EUR][1000 genomes]
rs45452100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4570480	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:18867800-18900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
10	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
11	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
13	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:18875600-18900600	Weak transcription	Esophagus	oesophagus
20	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
22	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
23	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
24	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
25	chr10:18877600-18900000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:18877600-18916400	Weak transcription	Gastric	stomach
27	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
29	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:18884200-18899800	Weak transcription	Fetal Lung	lung
31	chr10:18884200-18900200	Weak transcription	Fetal Brain Female	brain
32	chr10:18884200-18900400	Weak transcription	Ovary	ovary
33	chr10:18884200-18900600	Weak transcription	Brain Germinal Matrix	brain
34	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
35	chr10:18884400-18900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:18884600-18900200	Weak transcription	Fetal Thymus	thymus
37	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:18884800-18909400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:18885200-18901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:18885200-18904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:18885400-18900200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:18885400-18900600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:18885400-18916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:18891000-18900600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:18891600-18916400	Weak transcription	Lung	lung
47	chr10:18892400-18902400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:18894200-18901200	Strong transcription	Dnd41	blood
49	chr10:18894800-18900800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:18895400-18900600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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