Variant report

Variant	rs7073805
Chromosome Location	chr10:43081149-43081150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10128322	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap]
rs10900253	1.00[CEU][hapmap]
rs11239668	1.00[CEU][hapmap]
rs11239670	1.00[CEU][hapmap]
rs12240565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12247715	1.00[CHB][hapmap]
rs12253566	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12256744	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs12256867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs12261023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12261168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs12262549	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12265792	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12268549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413393	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs1591248	1.00[CEU][hapmap]
rs17343205	0.85[CEU][hapmap]
rs17427443	0.85[CEU][hapmap]
rs17428442	0.82[CEU][hapmap]
rs2297693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2419368	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3740324	1.00[CEU][hapmap]
rs3758512	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs3758513	1.00[CEU][hapmap]
rs672073	1.00[CEU][hapmap]
rs7068874	1.00[CEU][hapmap]
rs7069663	1.00[CEU][hapmap]
rs7097766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73266634	0.82[AFR][1000 genomes]
rs7900972	0.82[AFR][1000 genomes]
rs7904627	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7905834	0.85[CEU][hapmap]
rs7910969	0.82[AFR][1000 genomes]
rs7916307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7919880	0.82[AFR][1000 genomes]
rs7920292	0.87[CEU][hapmap]
rs9730806	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
14	nsv975073	chr10:43079185-43083666	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43076000-43088400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:43076400-43083000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:43076600-43083400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:43076800-43082400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:43076800-43083000	Weak transcription	Thymus	Thymus
6	chr10:43076800-43087000	Weak transcription	Fetal Heart	heart
7	chr10:43077000-43083000	Weak transcription	Left Ventricle	heart
8	chr10:43077000-43083000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:43077400-43081400	Weak transcription	Primary B cells from cord blood	blood
10	chr10:43077600-43081400	ZNF genes & repeats	Fetal Brain Female	brain
11	chr10:43077600-43088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:43077800-43083000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:43079200-43082400	Weak transcription	Placenta	Placenta
15	chr10:43079600-43082000	Weak transcription	Primary T cells from cord blood	blood
16	chr10:43079600-43083000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:43079600-43083000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:43079800-43082000	Weak transcription	Ovary	ovary
19	chr10:43079800-43082800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:43080000-43082200	Weak transcription	Brain Germinal Matrix	brain
21	chr10:43080000-43082400	Weak transcription	Gastric	stomach
22	chr10:43080000-43082600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:43080000-43082600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:43080000-43083000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:43080000-43083200	Weak transcription	NHEK	skin
26	chr10:43080000-43083400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:43080200-43083000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:43080200-43083000	Weak transcription	Fetal Thymus	thymus
29	chr10:43080400-43081200	Strong transcription	Fetal Lung	lung
30	chr10:43080400-43082400	Weak transcription	Fetal Stomach	stomach
31	chr10:43080600-43082800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:43080600-43086600	Weak transcription	Stomach Mucosa	stomach
33	chr10:43080800-43082200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:43080800-43082400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:43080800-43082400	Weak transcription	Pancreas	Pancrea
36	chr10:43080800-43088000	Weak transcription	Right Ventricle	heart
37	chr10:43081000-43081200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:43081000-43083000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:43081000-43083000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr10:43081000-43083000	Weak transcription	Colonic Mucosa	Colon
41	chr10:43081000-43083000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:43081000-43083200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:43081000-43087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:43081000-43087800	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:43081000-43087800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links