Variant report

Variant	rs7074640
Chromosome Location	chr10:4145942-4145943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10795125	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2397400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4881277	1.00[AMR][1000 genomes]
rs6601802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601803	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908441	1.00[AMR][1000 genomes]
rs7908705	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4132600-4148600	Weak transcription	Gastric	stomach
2	chr10:4144000-4147200	Enhancers	Hela-S3	cervix
3	chr10:4144600-4146000	Enhancers	HUVEC	blood vessel
4	chr10:4144600-4146000	Enhancers	NHEK	skin
5	chr10:4145000-4146000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:4145200-4146200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:4145200-4146400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:4145600-4146600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:4145800-4153400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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