Variant report

Variant	rs7908705
Chromosome Location	chr10:4126115-4126116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10795125	1.00[AMR][1000 genomes]
rs2397400	1.00[AMR][1000 genomes]
rs4881277	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601802	1.00[AMR][1000 genomes]
rs6601803	1.00[AMR][1000 genomes]
rs6601811	1.00[AMR][1000 genomes]
rs7074640	1.00[AMR][1000 genomes]
rs7908441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4117200-4126200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:4121800-4128200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:4122200-4126400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:4122600-4126400	Enhancers	NHDF-Ad	bronchial
5	chr10:4123400-4126800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:4123600-4126200	Enhancers	Right Ventricle	heart
7	chr10:4123600-4126400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:4123600-4126400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:4123600-4127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:4123600-4128400	Enhancers	Adipose Nuclei	Adipose
11	chr10:4123600-4128800	Enhancers	Fetal Heart	heart
12	chr10:4123800-4126200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:4123800-4126200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:4123800-4126200	Enhancers	Aorta	Aorta
15	chr10:4123800-4126200	Enhancers	Left Ventricle	heart
16	chr10:4123800-4126200	Enhancers	Ovary	ovary
17	chr10:4123800-4126200	Enhancers	NHLF	lung
18	chr10:4123800-4126200	Enhancers	Osteobl	bone
19	chr10:4123800-4126400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:4123800-4126400	Enhancers	Fetal Lung	lung
21	chr10:4124200-4128200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:4124600-4126200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:4124600-4126200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:4124800-4126200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:4124800-4126200	Enhancers	Colon Smooth Muscle	Colon
26	chr10:4124800-4127000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:4125000-4126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:4125000-4126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:4125000-4126200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:4125000-4126400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:4125200-4126200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr10:4125200-4126200	Enhancers	Fetal Muscle Leg	muscle
33	chr10:4125200-4126400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:4125200-4126400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:4125200-4126400	Enhancers	Fetal Brain Female	brain
36	chr10:4125200-4126400	Enhancers	Fetal Stomach	stomach
37	chr10:4125400-4126200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr10:4125400-4126200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:4125400-4126200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr10:4125400-4126400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:4125600-4126200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:4125600-4126200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr10:4125600-4126200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:4125600-4126200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:4125600-4126200	Enhancers	Brain Cingulate Gyrus	brain
46	chr10:4125600-4126200	Weak transcription	Fetal Kidney	kidney
47	chr10:4125600-4126200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr10:4125600-4126200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:4125600-4126400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr10:4125600-4126400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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