Variant report

Variant	rs7908441
Chromosome Location	chr10:4125711-4125712
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4124093..4126058-chr10:4126935..4129373,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10795125	1.00[AMR][1000 genomes]
rs11252431	1.00[MEX][hapmap]
rs12246141	1.00[MEX][hapmap]
rs12268483	1.00[MEX][hapmap]
rs2397400	1.00[AMR][1000 genomes]
rs4881277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601802	1.00[AMR][1000 genomes]
rs6601803	1.00[AMR][1000 genomes]
rs6601811	1.00[AMR][1000 genomes]
rs7074640	1.00[AMR][1000 genomes]
rs7908705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4117200-4126200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:4118000-4126000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:4118000-4126000	Weak transcription	NHEK	skin
4	chr10:4121800-4128200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:4122200-4126400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr10:4122600-4126400	Enhancers	NHDF-Ad	bronchial
7	chr10:4123400-4126800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:4123600-4126200	Enhancers	Right Ventricle	heart
9	chr10:4123600-4126400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:4123600-4126400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:4123600-4127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:4123600-4128400	Enhancers	Adipose Nuclei	Adipose
13	chr10:4123600-4128800	Enhancers	Fetal Heart	heart
14	chr10:4123800-4125800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:4123800-4125800	Enhancers	Lung	lung
16	chr10:4123800-4125800	Enhancers	Spleen	Spleen
17	chr10:4123800-4126000	Enhancers	Right Atrium	heart
18	chr10:4123800-4126200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:4123800-4126200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:4123800-4126200	Enhancers	Aorta	Aorta
21	chr10:4123800-4126200	Enhancers	Left Ventricle	heart
22	chr10:4123800-4126200	Enhancers	Ovary	ovary
23	chr10:4123800-4126200	Enhancers	NHLF	lung
24	chr10:4123800-4126200	Enhancers	Osteobl	bone
25	chr10:4123800-4126400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:4123800-4126400	Enhancers	Fetal Lung	lung
27	chr10:4124000-4125800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:4124200-4128200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:4124600-4125800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:4124600-4126200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:4124600-4126200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:4124800-4126200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:4124800-4126200	Enhancers	Colon Smooth Muscle	Colon
34	chr10:4124800-4127000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:4125000-4126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:4125000-4126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:4125000-4126200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:4125000-4126400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:4125200-4125800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:4125200-4125800	Enhancers	Small Intestine	intestine
41	chr10:4125200-4125800	Enhancers	HSMMtube	muscle
42	chr10:4125200-4126000	Enhancers	Placenta	Placenta
43	chr10:4125200-4126200	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr10:4125200-4126200	Enhancers	Fetal Muscle Leg	muscle
45	chr10:4125200-4126400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:4125200-4126400	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr10:4125200-4126400	Enhancers	Fetal Brain Female	brain
48	chr10:4125200-4126400	Enhancers	Fetal Stomach	stomach
49	chr10:4125400-4125800	Enhancers	Brain Germinal Matrix	brain
50	chr10:4125400-4126000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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