Variant report

Variant	rs7074981
Chromosome Location	chr10:52795309-52795310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10740127	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10761774	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10822169	0.88[ASN][1000 genomes]
rs10995555	0.83[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes]
rs2660199	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2660200	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2660201	0.88[ASN][1000 genomes]
rs2660204	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2666536	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2666545	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2666546	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2666547	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4303185	0.83[CEU][hapmap]
rs4576762	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4935009	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4935218	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4935219	0.88[AMR][1000 genomes]
rs7073617	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52791800-52795400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:52792400-52796400	Weak transcription	Fetal Stomach	stomach
3	chr10:52792600-52796400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:52792800-52795800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:52793000-52795400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:52793000-52795600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:52793000-52796200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:52794200-52796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:52794200-52796600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:52794600-52795400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:52794600-52795600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr10:52794800-52795400	Enhancers	Aorta	Aorta
13	chr10:52795000-52796000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:52795000-52796200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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