Variant report

Variant	rs7078108
Chromosome Location	chr10:21317779-21317780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56097275	1.00[EUR][1000 genomes]
rs58157498	1.00[EUR][1000 genomes]
rs7077698	0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7087917	1.00[EUR][1000 genomes]
rs7095974	1.00[EUR][1000 genomes]
rs73607578	1.00[EUR][1000 genomes]
rs73607579	1.00[EUR][1000 genomes]
rs73607580	1.00[EUR][1000 genomes]
rs73607581	1.00[EUR][1000 genomes]
rs73607582	1.00[EUR][1000 genomes]
rs7920119	1.00[EUR][1000 genomes]
rs9665716	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv975768	chr10:21313038-21319916	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv947763	chr10:21316626-21319916	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21290400-21319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:21305200-21319800	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:21309000-21318600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:21311200-21318000	Weak transcription	Lung	lung
5	chr10:21311200-21322200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:21312400-21318000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:21316200-21318000	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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