Variant report

Variant	rs9665716
Chromosome Location	chr10:21350048-21350049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11012593	1.00[EUR][1000 genomes]
rs12242402	1.00[EUR][1000 genomes]
rs12244302	1.00[EUR][1000 genomes]
rs12244732	1.00[EUR][1000 genomes]
rs12247298	1.00[EUR][1000 genomes]
rs12253331	1.00[EUR][1000 genomes]
rs12261699	1.00[EUR][1000 genomes]
rs56097275	1.00[EUR][1000 genomes]
rs58157498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077698	1.00[EUR][1000 genomes]
rs7078108	1.00[EUR][1000 genomes]
rs7087917	1.00[EUR][1000 genomes]
rs7095974	1.00[EUR][1000 genomes]
rs73607578	1.00[EUR][1000 genomes]
rs73607579	1.00[EUR][1000 genomes]
rs73607580	1.00[EUR][1000 genomes]
rs73607581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73607582	1.00[EUR][1000 genomes]
rs73609241	1.00[EUR][1000 genomes]
rs7920119	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21339200-21351800	Weak transcription	Pancreas	Pancrea
2	chr10:21342000-21350400	Weak transcription	Fetal Kidney	kidney
3	chr10:21345000-21354600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21345200-21350600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:21347400-21350800	Weak transcription	Fetal Heart	heart
6	chr10:21348200-21358800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21349200-21354200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:21349800-21354600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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