Variant report

Variant	rs7079237
Chromosome Location	chr10:23659587-23659588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23656227..23658764-chr10:23659457..23661559,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10828435	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828436	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013424	0.84[EUR][1000 genomes]
rs11013430	0.81[EUR][1000 genomes]
rs11013455	0.88[CEU][hapmap]
rs12355434	0.80[EUR][1000 genomes]
rs12358180	0.88[CEU][hapmap]
rs12414475	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1398023	0.93[EUR][1000 genomes]
rs1398024	0.94[EUR][1000 genomes]
rs1511823	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1511824	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2886497	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4287250	0.94[EUR][1000 genomes]
rs4297368	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4590755	0.94[EUR][1000 genomes]
rs4641365	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56710288	0.88[ASN][1000 genomes]
rs67207208	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67908826	0.94[EUR][1000 genomes]
rs72788434	0.94[EUR][1000 genomes]
rs7916466	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7916749	0.89[CEU][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23655600-23659600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr10:23656400-23659600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr10:23656400-23660600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23656800-23659600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:23656800-23660000	Enhancers	HSMMtube	muscle
6	chr10:23656800-23660600	Enhancers	NHEK	skin
7	chr10:23656800-23664800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:23657000-23659800	Enhancers	Fetal Heart	heart
9	chr10:23657000-23660400	Enhancers	HMEC	breast
10	chr10:23657600-23660800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:23657800-23659600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:23658000-23659600	Enhancers	Dnd41	blood
13	chr10:23658000-23659600	Enhancers	GM12878-XiMat	blood
14	chr10:23658000-23659800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:23658200-23659600	Enhancers	Primary T cells from cord blood	blood
16	chr10:23658200-23659800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:23658200-23659800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr10:23658400-23659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:23658400-23659600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:23658400-23660000	Enhancers	Left Ventricle	heart
21	chr10:23658400-23660000	Enhancers	HSMM	muscle
22	chr10:23658400-23668000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:23658800-23659600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:23659000-23659600	Enhancers	Fetal Muscle Leg	muscle
25	chr10:23659000-23659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:23659200-23659600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr10:23659400-23659600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:23659400-23659600	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr10:23659400-23659800	Enhancers	Fetal Kidney	kidney

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