Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11013474	0.88[JPT][hapmap]
rs11013479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11013481	0.88[JPT][hapmap]
rs11013484	0.88[JPT][hapmap]
rs12571351	0.88[JPT][hapmap]
rs12572169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs16923233	0.88[JPT][hapmap]
rs16923259	0.88[JPT][hapmap]
rs2089879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2089880	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4442437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4747475	0.88[JPT][hapmap]
rs7079490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7079866	0.82[JPT][hapmap]
rs7080700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7083306	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7084431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7096353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7097072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7098076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7919581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9633627	0.88[JPT][hapmap]
rs9633648	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23721800-23727200	Weak transcription	HMEC	breast
3	chr10:23721800-23727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23721800-23727400	Weak transcription	NHEK	skin
5	chr10:23722000-23726200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:23722200-23725600	Weak transcription	Stomach Mucosa	stomach
9	chr10:23722200-23727000	Weak transcription	Hela-S3	cervix
10	chr10:23723200-23727000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:23723400-23726800	Weak transcription	Primary B cells from cord blood	blood
12	chr10:23724400-23727000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:23724800-23727200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:23725200-23727200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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