Variant report

Variant	rs7079866
Chromosome Location	chr10:23733141-23733142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23732769..23734965-chr10:23736236..23739152,2	K562	blood:
2	chr10:23731583..23733567-chr10:23742543..23744623,2	MCF-7	breast:
3	chr10:23732163..23734973-chr10:23736467..23739152,3	K562	blood:
4	chr10:23726971..23730687-chr10:23732679..23735165,3	MCF-7	breast:
5	chr10:23732386..23735333-chr10:23736238..23738738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10828460	0.97[ASN][1000 genomes]
rs10828461	0.94[ASN][1000 genomes]
rs11013468	0.84[EUR][1000 genomes]
rs11013473	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11013474	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs11013476	0.91[ASN][1000 genomes]
rs11013478	0.93[ASN][1000 genomes]
rs11013479	0.81[ASN][1000 genomes]
rs11013480	0.93[ASN][1000 genomes]
rs11013481	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs11013484	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs11013491	1.00[ASN][1000 genomes]
rs11013492	0.99[ASN][1000 genomes]
rs11013494	0.99[ASN][1000 genomes]
rs11013495	0.99[ASN][1000 genomes]
rs11013496	0.99[ASN][1000 genomes]
rs11013497	0.99[ASN][1000 genomes]
rs11013498	0.99[ASN][1000 genomes]
rs11013501	1.00[CEU][hapmap]
rs11013527	0.86[ASN][1000 genomes]
rs12217320	0.99[ASN][1000 genomes]
rs12219829	0.95[CHB][hapmap]
rs12254101	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258295	0.87[AFR][1000 genomes]
rs12266879	1.00[CEU][hapmap]
rs12571351	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs12571384	0.82[ASN][1000 genomes]
rs12572169	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1398026	1.00[CEU][hapmap];0.87[AFR][1000 genomes]
rs1398027	0.98[ASN][1000 genomes]
rs1511825	1.00[CEU][hapmap]
rs1553905	0.80[ASN][1000 genomes]
rs16923233	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs16923259	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs16923277	0.97[ASN][1000 genomes]
rs1995981	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2089879	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2089880	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs3934842	1.00[CEU][hapmap]
rs4442437	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4747471	0.92[ASN][1000 genomes]
rs4747474	0.80[ASN][1000 genomes]
rs4747475	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs4747476	0.99[ASN][1000 genomes]
rs4748885	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748886	0.81[ASN][1000 genomes]
rs4748887	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs4748889	0.93[ASN][1000 genomes]
rs4748891	1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs4748895	0.97[ASN][1000 genomes]
rs57566783	0.81[ASN][1000 genomes]
rs58056630	0.82[ASN][1000 genomes]
rs58305149	0.91[ASN][1000 genomes]
rs58604095	0.81[ASN][1000 genomes]
rs58614955	0.93[ASN][1000 genomes]
rs59547906	0.93[ASN][1000 genomes]
rs6482276	0.81[ASN][1000 genomes]
rs7079349	0.82[JPT][hapmap]
rs7079490	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7080700	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7083306	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7084145	1.00[CEU][hapmap]
rs7084431	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7087230	0.81[ASN][1000 genomes]
rs7094796	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs7096353	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7097072	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7097167	1.00[CEU][hapmap]
rs7097185	1.00[CEU][hapmap]
rs7098076	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7100463	0.81[ASN][1000 genomes]
rs7100518	0.81[ASN][1000 genomes]
rs73602556	0.81[ASN][1000 genomes]
rs74122431	0.93[ASN][1000 genomes]
rs74122432	0.93[ASN][1000 genomes]
rs74122435	0.93[ASN][1000 genomes]
rs74122436	0.93[ASN][1000 genomes]
rs74122437	0.93[ASN][1000 genomes]
rs7905070	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919581	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs9633627	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs9633648	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23729800-23734400	Weak transcription	K562	blood
2	chr10:23729800-23736400	Weak transcription	Gastric	stomach
3	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
4	chr10:23729800-23738400	Weak transcription	Lung	lung
5	chr10:23730000-23735800	Weak transcription	HUVEC	blood vessel
6	chr10:23730400-23734800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:23730800-23734400	Weak transcription	Stomach Mucosa	stomach
8	chr10:23730800-23738000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:23731000-23733200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:23731000-23735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:23731000-23738600	Weak transcription	Placenta	Placenta
12	chr10:23731200-23734200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:23731200-23738600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:23731600-23737400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
16	chr10:23731800-23733200	Strong transcription	Fetal Lung	lung
17	chr10:23731800-23734400	Weak transcription	Small Intestine	intestine
18	chr10:23731800-23736200	Weak transcription	Thymus	Thymus
19	chr10:23731800-23738400	Weak transcription	Aorta	Aorta
20	chr10:23731800-23738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:23731800-23740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:23732000-23733200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:23732000-23733400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:23732000-23733400	Enhancers	Hela-S3	cervix
26	chr10:23732000-23733600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:23732000-23734400	Weak transcription	Fetal Intestine Large	intestine
28	chr10:23732000-23734400	Weak transcription	Fetal Kidney	kidney
29	chr10:23732000-23735400	Weak transcription	HMEC	breast
30	chr10:23732000-23737600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr10:23732000-23737800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:23732000-23737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:23732000-23738000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:23732000-23738200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:23732000-23738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:23732000-23740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:23732200-23734400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:23732200-23734400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:23732200-23734400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr10:23732200-23735000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:23732200-23736000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:23732200-23736400	Weak transcription	HSMM	muscle
43	chr10:23732200-23737400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:23732200-23737400	Weak transcription	Primary T cells from cord blood	blood
45	chr10:23732200-23737600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:23732200-23737800	Weak transcription	Brain Angular Gyrus	brain
47	chr10:23732200-23738400	Weak transcription	Right Atrium	heart
48	chr10:23732200-23739200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:23732200-23747800	Weak transcription	NHEK	skin
50	chr10:23732400-23734600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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