Variant report

Variant	rs12266879
Chromosome Location	chr10:23721998-23721999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23720439..23723434-chr10:23726111..23729992,4	MCF-7	breast:
2	chr10:23719313..23724177-chr10:23725494..23728219,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11013468	0.91[EUR][1000 genomes]
rs11013469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013473	0.91[EUR][1000 genomes]
rs11013475	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013490	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013501	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013508	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12240690	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12241556	0.81[EUR][1000 genomes]
rs12246797	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254101	0.91[EUR][1000 genomes]
rs12254124	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258295	1.00[EUR][1000 genomes]
rs12265309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1511825	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1995981	0.91[EUR][1000 genomes]
rs3934842	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4748885	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4748887	1.00[CEU][hapmap]
rs59647470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7072045	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079866	1.00[CEU][hapmap]
rs7080648	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084145	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084695	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7097167	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7097185	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905070	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23719600-23722200	Enhancers	Stomach Mucosa	stomach
2	chr10:23720200-23723800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:23720800-23722000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:23720800-23722000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:23721000-23722000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:23721000-23722000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:23721000-23722000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr10:23721400-23722000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:23721800-23722000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:23721800-23722200	Enhancers	Hela-S3	cervix
12	chr10:23721800-23722200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr10:23721800-23727200	Weak transcription	HMEC	breast
14	chr10:23721800-23727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:23721800-23727400	Weak transcription	NHEK	skin

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