Variant report
| Variant | rs59647470 |
|---|---|
| Chromosome Location | chr10:23719469-23719470 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165312 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11013469 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11013475 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11013486 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11013488 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11013490 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11013501 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11013508 | 0.89[AMR][1000 genomes] |
| rs12240690 | 0.89[AMR][1000 genomes] |
| rs12246797 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12254124 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12258295 | 0.83[EUR][1000 genomes] |
| rs12265309 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12266879 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1398026 | 0.83[EUR][1000 genomes] |
| rs1511825 | 0.83[EUR][1000 genomes] |
| rs3934842 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4748885 | 0.89[AFR][1000 genomes] |
| rs7072045 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7080648 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7084145 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7084695 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7094796 | 0.83[EUR][1000 genomes] |
| rs7097167 | 0.83[EUR][1000 genomes] |
| rs7097185 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825305 | chr10:23698620-23740919 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23719200-23719600 | Weak transcription | Stomach Mucosa | stomach |
