Variant report

Variant	rs7097167
Chromosome Location	chr10:23726492-23726493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23726490-23726698	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23718207..23720291-chr10:23725300..23726968,2	K562	blood:
2	chr10:23718339..23720291-chr10:23725094..23726968,2	K562	blood:

Variant related genes	Relation type
OTUD1	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11013468	0.91[EUR][1000 genomes]
rs11013469	1.00[EUR][1000 genomes]
rs11013473	0.91[EUR][1000 genomes]
rs11013475	1.00[EUR][1000 genomes]
rs11013486	1.00[EUR][1000 genomes]
rs11013488	1.00[EUR][1000 genomes]
rs11013490	1.00[EUR][1000 genomes]
rs11013501	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11013508	0.81[EUR][1000 genomes]
rs12240690	0.83[EUR][1000 genomes]
rs12241556	0.81[EUR][1000 genomes]
rs12246797	1.00[EUR][1000 genomes]
rs12254101	0.91[EUR][1000 genomes]
rs12254124	1.00[EUR][1000 genomes]
rs12258295	1.00[EUR][1000 genomes]
rs12265309	1.00[EUR][1000 genomes]
rs12266879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1398026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1511822	0.88[ASN][1000 genomes]
rs1511825	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16923290	0.88[ASN][1000 genomes]
rs16923324	0.88[ASN][1000 genomes]
rs16923337	0.88[ASN][1000 genomes]
rs16923381	0.82[ASN][1000 genomes]
rs1995981	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3864843	0.82[ASN][1000 genomes]
rs3924036	0.82[ASN][1000 genomes]
rs3934842	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4586049	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4748885	0.91[EUR][1000 genomes]
rs4748887	1.00[CEU][hapmap]
rs56411865	0.82[ASN][1000 genomes]
rs56874947	0.88[ASN][1000 genomes]
rs59647470	0.83[EUR][1000 genomes]
rs6482275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7072045	1.00[EUR][1000 genomes]
rs7078874	0.88[ASN][1000 genomes]
rs7079866	1.00[CEU][hapmap]
rs7080648	1.00[EUR][1000 genomes]
rs7084145	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7084657	0.88[ASN][1000 genomes]
rs7084695	1.00[EUR][1000 genomes]
rs7093562	0.94[AFR][1000 genomes]
rs7094796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7097185	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7100487	0.88[ASN][1000 genomes]
rs73602552	0.88[ASN][1000 genomes]
rs73602553	0.88[ASN][1000 genomes]
rs73602557	0.88[ASN][1000 genomes]
rs73602558	0.88[ASN][1000 genomes]
rs73602560	0.88[ASN][1000 genomes]
rs73602561	0.88[ASN][1000 genomes]
rs7904709	0.88[ASN][1000 genomes]
rs7905070	0.91[EUR][1000 genomes]
rs7917171	0.88[ASN][1000 genomes]
rs9651373	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23721800-23727200	Weak transcription	HMEC	breast
3	chr10:23721800-23727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:23721800-23727400	Weak transcription	NHEK	skin
5	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:23722000-23727200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:23722200-23727000	Weak transcription	Hela-S3	cervix
8	chr10:23723200-23727000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:23723400-23726800	Weak transcription	Primary B cells from cord blood	blood
10	chr10:23724400-23727000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:23724800-23727200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:23725200-23727200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:23725600-23727400	Enhancers	Stomach Mucosa	stomach
14	chr10:23726200-23727200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr10:23726400-23727400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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