Variant report

Variant	rs7094796
Chromosome Location	chr10:23732781-23732782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23732769..23734965-chr10:23736236..23739152,2	K562	blood:
2	chr10:23731583..23733567-chr10:23742543..23744623,2	MCF-7	breast:
3	chr10:23732163..23734973-chr10:23736467..23739152,3	K562	blood:
4	chr10:23726971..23730687-chr10:23732679..23735165,3	MCF-7	breast:
5	chr10:23732386..23735333-chr10:23736238..23738738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11013468	0.91[EUR][1000 genomes]
rs11013469	1.00[EUR][1000 genomes]
rs11013473	0.91[EUR][1000 genomes]
rs11013475	1.00[EUR][1000 genomes]
rs11013486	1.00[EUR][1000 genomes]
rs11013488	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013490	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013501	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013508	0.81[EUR][1000 genomes]
rs12240690	0.83[EUR][1000 genomes]
rs12241556	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12246797	1.00[EUR][1000 genomes]
rs12254101	0.91[EUR][1000 genomes]
rs12254124	1.00[EUR][1000 genomes]
rs12258295	1.00[EUR][1000 genomes]
rs12265309	1.00[EUR][1000 genomes]
rs12266879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1398026	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1511825	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1995981	0.91[EUR][1000 genomes]
rs3934842	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4748885	0.91[EUR][1000 genomes]
rs4748887	1.00[CEU][hapmap]
rs59647470	0.83[EUR][1000 genomes]
rs7072045	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079866	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs7080648	1.00[EUR][1000 genomes]
rs7084145	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7084695	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097167	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7097185	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7905070	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv975033	chr10:23726218-23738848	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23727400-23732800	Active TSS	Right Ventricle	heart
2	chr10:23729800-23734400	Weak transcription	K562	blood
3	chr10:23729800-23736400	Weak transcription	Gastric	stomach
4	chr10:23729800-23738400	Weak transcription	Esophagus	oesophagus
5	chr10:23729800-23738400	Weak transcription	Lung	lung
6	chr10:23730000-23735800	Weak transcription	HUVEC	blood vessel
7	chr10:23730200-23733000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:23730400-23734800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:23730800-23734400	Weak transcription	Stomach Mucosa	stomach
10	chr10:23730800-23738000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:23731000-23733000	Weak transcription	HepG2	liver
12	chr10:23731000-23733200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:23731000-23735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:23731000-23738600	Weak transcription	Placenta	Placenta
15	chr10:23731200-23733000	Enhancers	Colon Smooth Muscle	Colon
16	chr10:23731200-23734200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:23731200-23738600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:23731600-23732800	Enhancers	Spleen	Spleen
19	chr10:23731600-23733000	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr10:23731600-23733000	Enhancers	Psoas Muscle	Psoas
21	chr10:23731600-23737400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
23	chr10:23731800-23732800	Genic enhancers	Adipose Nuclei	Adipose
24	chr10:23731800-23733000	Genic enhancers	Left Ventricle	heart
25	chr10:23731800-23733200	Strong transcription	Fetal Lung	lung
26	chr10:23731800-23734400	Weak transcription	Small Intestine	intestine
27	chr10:23731800-23736200	Weak transcription	Thymus	Thymus
28	chr10:23731800-23738400	Weak transcription	Aorta	Aorta
29	chr10:23731800-23738400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:23731800-23740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:23732000-23732800	Genic enhancers	Primary B cells from cord blood	blood
33	chr10:23732000-23732800	Enhancers	Brain Substantia Nigra	brain
34	chr10:23732000-23732800	Genic enhancers	Ovary	ovary
35	chr10:23732000-23733000	Genic enhancers	Fetal Brain Female	brain
36	chr10:23732000-23733200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:23732000-23733400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:23732000-23733400	Enhancers	Hela-S3	cervix
39	chr10:23732000-23733600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr10:23732000-23734400	Weak transcription	Fetal Intestine Large	intestine
41	chr10:23732000-23734400	Weak transcription	Fetal Kidney	kidney
42	chr10:23732000-23735400	Weak transcription	HMEC	breast
43	chr10:23732000-23737600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:23732000-23737800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:23732000-23737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:23732000-23738000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:23732000-23738200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:23732000-23738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:23732000-23740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:23732200-23732800	Genic enhancers	Primary monocytes fromperipheralblood	blood

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