Variant report

Variant	rs4748885
Chromosome Location	chr10:23713733-23713734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23707659..23710608-chr10:23712696..23714287,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10828460	0.89[ASN][1000 genomes]
rs10828461	0.86[ASN][1000 genomes]
rs11013468	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013469	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11013473	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013474	0.98[ASN][1000 genomes]
rs11013475	0.91[EUR][1000 genomes]
rs11013476	0.97[ASN][1000 genomes]
rs11013478	0.99[ASN][1000 genomes]
rs11013479	0.87[ASN][1000 genomes]
rs11013480	0.99[ASN][1000 genomes]
rs11013481	0.99[ASN][1000 genomes]
rs11013482	0.86[ASN][1000 genomes]
rs11013483	0.84[ASN][1000 genomes]
rs11013484	0.96[ASN][1000 genomes]
rs11013486	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11013488	0.91[EUR][1000 genomes]
rs11013490	0.91[EUR][1000 genomes]
rs11013491	0.92[ASN][1000 genomes]
rs11013492	0.91[ASN][1000 genomes]
rs11013494	0.91[ASN][1000 genomes]
rs11013495	0.91[ASN][1000 genomes]
rs11013496	0.91[ASN][1000 genomes]
rs11013497	0.91[ASN][1000 genomes]
rs11013498	0.91[ASN][1000 genomes]
rs11013501	0.91[EUR][1000 genomes]
rs12217320	0.91[ASN][1000 genomes]
rs12246797	0.91[EUR][1000 genomes]
rs12254101	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12254124	0.91[EUR][1000 genomes]
rs12258295	0.91[EUR][1000 genomes]
rs12265309	0.91[EUR][1000 genomes]
rs12266879	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12571102	0.82[ASN][1000 genomes]
rs12571351	0.94[ASN][1000 genomes]
rs12571384	0.84[ASN][1000 genomes]
rs12572169	0.84[ASN][1000 genomes]
rs1398026	0.91[EUR][1000 genomes]
rs1398027	0.90[ASN][1000 genomes]
rs1511825	0.91[EUR][1000 genomes]
rs1553905	0.86[ASN][1000 genomes]
rs16923233	0.99[ASN][1000 genomes]
rs16923259	0.92[ASN][1000 genomes]
rs16923277	0.89[ASN][1000 genomes]
rs1995981	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2089876	0.83[ASN][1000 genomes]
rs2089879	0.85[ASN][1000 genomes]
rs2089880	0.83[ASN][1000 genomes]
rs3934842	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4442437	0.87[ASN][1000 genomes]
rs4747470	0.87[ASN][1000 genomes]
rs4747471	1.00[ASN][1000 genomes]
rs4747474	0.86[ASN][1000 genomes]
rs4747475	0.91[ASN][1000 genomes]
rs4747476	0.91[ASN][1000 genomes]
rs4748886	0.87[ASN][1000 genomes]
rs4748887	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748889	0.99[ASN][1000 genomes]
rs4748891	0.91[ASN][1000 genomes]
rs4748895	0.89[ASN][1000 genomes]
rs57566783	0.87[ASN][1000 genomes]
rs58056630	0.85[ASN][1000 genomes]
rs58305149	0.97[ASN][1000 genomes]
rs58604095	0.87[ASN][1000 genomes]
rs58614955	0.99[ASN][1000 genomes]
rs59547906	0.99[ASN][1000 genomes]
rs59647470	0.89[AFR][1000 genomes]
rs6482276	0.87[ASN][1000 genomes]
rs7072045	0.91[EUR][1000 genomes]
rs7079490	0.82[ASN][1000 genomes]
rs7079866	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7080648	0.91[EUR][1000 genomes]
rs7080700	0.87[ASN][1000 genomes]
rs7083306	0.81[ASN][1000 genomes]
rs7084145	0.91[EUR][1000 genomes]
rs7084431	0.86[ASN][1000 genomes]
rs7084695	0.91[EUR][1000 genomes]
rs7087230	0.87[ASN][1000 genomes]
rs7094796	0.91[EUR][1000 genomes]
rs7096353	0.87[ASN][1000 genomes]
rs7097072	0.87[ASN][1000 genomes]
rs7097167	0.91[EUR][1000 genomes]
rs7097185	0.91[EUR][1000 genomes]
rs7098076	0.87[ASN][1000 genomes]
rs7100463	0.87[ASN][1000 genomes]
rs7100518	0.87[ASN][1000 genomes]
rs73602556	0.83[ASN][1000 genomes]
rs74122431	0.99[ASN][1000 genomes]
rs74122432	0.99[ASN][1000 genomes]
rs74122435	0.99[ASN][1000 genomes]
rs74122436	0.99[ASN][1000 genomes]
rs74122437	0.99[ASN][1000 genomes]
rs7905070	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919581	0.86[ASN][1000 genomes]
rs9633627	0.91[ASN][1000 genomes]
rs9633648	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23712000-23719000	Weak transcription	Stomach Mucosa	stomach

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