Variant report

Variant	rs4747476
Chromosome Location	chr10:23750473-23750474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23749913..23751537-chr10:23756698..23758599,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10828460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013479	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs11013480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013482	1.00[EUR][1000 genomes]
rs11013483	1.00[EUR][1000 genomes]
rs11013484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013491	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013556	0.85[AMR][1000 genomes]
rs11013558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219829	0.94[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254101	0.99[ASN][1000 genomes]
rs12569512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes]
rs12571351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12571384	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12572169	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1398027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1553905	1.00[EUR][1000 genomes]
rs16923233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923259	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16923277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1995981	0.85[ASN][1000 genomes]
rs2089876	1.00[EUR][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2089880	0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3898626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442437	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs4747470	1.00[EUR][1000 genomes]
rs4747471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747474	1.00[EUR][1000 genomes]
rs4747475	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748882	1.00[AFR][1000 genomes]
rs4748885	0.91[ASN][1000 genomes]
rs4748886	1.00[EUR][1000 genomes]
rs4748889	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748891	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes]
rs58056630	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58305149	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58604095	1.00[EUR][1000 genomes]
rs58614955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59547906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61412542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079349	0.88[JPT][hapmap]
rs7079490	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7079866	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs7080700	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7083306	0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7084431	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7087230	1.00[EUR][1000 genomes]
rs7096353	0.88[JPT][hapmap]
rs7097072	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7098076	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7100463	1.00[EUR][1000 genomes]
rs7100518	1.00[EUR][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes]
rs74122431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122432	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122435	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122436	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74122437	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7905070	0.97[ASN][1000 genomes]
rs7919581	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs867892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633627	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
3	chr10:23741400-23751800	Weak transcription	Right Atrium	heart
4	chr10:23742400-23750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:23746600-23751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:23747600-23750600	Weak transcription	Psoas Muscle	Psoas
7	chr10:23748600-23750600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:23748600-23754000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:23748800-23750600	Weak transcription	Lung	lung
10	chr10:23749400-23751000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:23749600-23750600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:23749800-23751200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:23750000-23750600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:23750000-23751400	Enhancers	Fetal Heart	heart
15	chr10:23750200-23751000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:23750200-23751200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:23750200-23751200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:23750400-23750800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr10:23750400-23750800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:23750400-23750800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:23750400-23750800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:23750400-23751000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:23750400-23751200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:23750400-23751200	Enhancers	HepG2	liver

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