Variant report

Variant	rs11013478
Chromosome Location	chr10:23721465-23721466
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23720439..23723434-chr10:23726111..23729992,4	MCF-7	breast:
2	chr10:23719313..23724177-chr10:23725494..23728219,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10828460	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10828473	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013468	0.84[ASN][1000 genomes]
rs11013472	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013473	0.87[ASN][1000 genomes]
rs11013474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013479	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013482	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013483	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013484	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013491	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11013492	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013494	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013495	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013496	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013497	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013498	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013527	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013539	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013544	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013558	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013561	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12219829	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254101	0.93[ASN][1000 genomes]
rs12569512	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571102	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12571351	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12571384	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572169	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1398027	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1553905	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16923233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923259	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16923277	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995981	0.82[ASN][1000 genomes]
rs2089876	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2089878	1.00[EUR][1000 genomes]
rs2089879	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2089880	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3898626	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442437	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747470	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747471	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747474	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747475	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747476	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748885	0.99[ASN][1000 genomes]
rs4748886	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748887	0.87[ASN][1000 genomes]
rs4748889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748891	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748895	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4748904	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566783	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58056630	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58305149	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58604095	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58614955	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59547906	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61412542	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482276	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079490	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7079866	0.93[ASN][1000 genomes]
rs7080700	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7083306	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7084431	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7087230	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7096353	0.87[ASN][1000 genomes]
rs7097072	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7098076	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7100463	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7100518	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73602555	1.00[EUR][1000 genomes]
rs73602556	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74122431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7905070	0.91[ASN][1000 genomes]
rs7919581	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs867892	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945778	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9633627	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9633648	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv18855	chr10:23721447-23721937	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23719600-23722200	Enhancers	Stomach Mucosa	stomach
2	chr10:23720200-23723800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:23720600-23721800	Enhancers	NHEK	skin
4	chr10:23720800-23722000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:23720800-23722000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:23721000-23721800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:23721000-23721800	Enhancers	HMEC	breast
8	chr10:23721000-23722000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:23721000-23722000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:23721000-23722000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr10:23721400-23721600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:23721400-23721800	Active TSS	Primary B cells from cord blood	blood
13	chr10:23721400-23721800	Flanking Active TSS	Hela-S3	cervix
14	chr10:23721400-23722000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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