Variant report

Variant	rs58604095
Chromosome Location	chr10:23716049-23716050
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23698540..23700935-chr10:23715186..23717309,2	MCF-7	breast:
2	chr10:23715110..23718111-chr10:23726420..23729994,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10828460	1.00[EUR][1000 genomes]
rs10828461	1.00[EUR][1000 genomes]
rs10828473	1.00[EUR][1000 genomes]
rs11013468	0.97[ASN][1000 genomes]
rs11013472	1.00[EUR][1000 genomes]
rs11013473	0.99[ASN][1000 genomes]
rs11013474	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013476	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013478	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013480	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013481	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013482	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013483	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013484	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013491	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11013492	1.00[EUR][1000 genomes]
rs11013494	1.00[EUR][1000 genomes]
rs11013495	1.00[EUR][1000 genomes]
rs11013496	1.00[EUR][1000 genomes]
rs11013497	1.00[EUR][1000 genomes]
rs11013498	1.00[EUR][1000 genomes]
rs11013527	1.00[EUR][1000 genomes]
rs11013539	1.00[EUR][1000 genomes]
rs11013544	1.00[EUR][1000 genomes]
rs11013558	1.00[EUR][1000 genomes]
rs11013561	1.00[EUR][1000 genomes]
rs11527594	1.00[EUR][1000 genomes]
rs12217320	1.00[EUR][1000 genomes]
rs12219829	1.00[EUR][1000 genomes]
rs12254101	0.81[ASN][1000 genomes]
rs12569512	1.00[EUR][1000 genomes]
rs12571102	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12571351	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12571384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572169	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398027	1.00[EUR][1000 genomes]
rs1553905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16923233	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16923259	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16923277	1.00[EUR][1000 genomes]
rs1995981	0.95[ASN][1000 genomes]
rs2089876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2089878	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2089879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2089880	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35182895	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3898626	1.00[EUR][1000 genomes]
rs4442437	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747470	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747471	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747475	1.00[EUR][1000 genomes]
rs4747476	1.00[EUR][1000 genomes]
rs4748885	0.87[ASN][1000 genomes]
rs4748886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748887	1.00[ASN][1000 genomes]
rs4748889	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748891	1.00[EUR][1000 genomes]
rs4748895	1.00[EUR][1000 genomes]
rs4748904	1.00[EUR][1000 genomes]
rs56874947	0.80[AFR][1000 genomes]
rs57566783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58056630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58305149	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58614955	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59547906	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61412542	1.00[EUR][1000 genomes]
rs6482275	0.80[AFR][1000 genomes]
rs6482276	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067635	1.00[EUR][1000 genomes]
rs7079490	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7079866	0.81[ASN][1000 genomes]
rs7080700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083306	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084431	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7087230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092162	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7096353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7097072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100487	0.86[AFR][1000 genomes]
rs7100518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602552	0.80[AFR][1000 genomes]
rs73602553	0.80[AFR][1000 genomes]
rs73602555	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73602556	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74122431	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74122432	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74122435	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74122436	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74122437	0.87[ASN][1000 genomes]
rs7919581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs867892	1.00[EUR][1000 genomes]
rs945778	1.00[EUR][1000 genomes]
rs9633627	1.00[EUR][1000 genomes]
rs9633648	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23712000-23719000	Weak transcription	Stomach Mucosa	stomach

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